(8 nodes) 3-5 DNA helicase activity network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_03028	DEAD/DEAH box helicase. (841 aa)
	wrn	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (926 aa)
	DFA_03029	DEAD/DEAH box helicase. (507 aa)
	ino80	SNF2-related domain-containing protein. (2377 aa)
	rvb2	RuvB-like helicase; Belongs to the RuvB family. (464 aa)
	DFA_04537	ATP-dependent RNA helicase. (1558 aa)
	repB	Transcription factor IIH subunit. (810 aa)
	DFA_11501	Uncharacterized protein. (1329 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_03028	DFA_04537	F4PGF0	F4PPV3	DEAD/DEAH box helicase.	ATP-dependent RNA helicase.	0.639
DFA_03029	DFA_04537	F4PGF1	F4PPV3	DEAD/DEAH box helicase.	ATP-dependent RNA helicase.	0.639
DFA_04537	DFA_03028	F4PPV3	F4PGF0	ATP-dependent RNA helicase.	DEAD/DEAH box helicase.	0.639
DFA_04537	DFA_03029	F4PPV3	F4PGF1	ATP-dependent RNA helicase.	DEAD/DEAH box helicase.	0.639
DFA_04537	DFA_11501	F4PPV3	F4QDB2	ATP-dependent RNA helicase.	Uncharacterized protein.	0.996
DFA_04537	ino80	F4PPV3	F4Q6X3	ATP-dependent RNA helicase.	SNF2-related domain-containing protein.	0.866
DFA_04537	repB	F4PPV3	F4QC84	ATP-dependent RNA helicase.	Transcription factor IIH subunit.	0.878
DFA_04537	wrn	F4PPV3	F4PT39	ATP-dependent RNA helicase.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.998
DFA_11501	DFA_04537	F4QDB2	F4PPV3	Uncharacterized protein.	ATP-dependent RNA helicase.	0.996
DFA_11501	ino80	F4QDB2	F4Q6X3	Uncharacterized protein.	SNF2-related domain-containing protein.	0.444
DFA_11501	wrn	F4QDB2	F4PT39	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.498
ino80	DFA_04537	F4Q6X3	F4PPV3	SNF2-related domain-containing protein.	ATP-dependent RNA helicase.	0.866
ino80	DFA_11501	F4Q6X3	F4QDB2	SNF2-related domain-containing protein.	Uncharacterized protein.	0.444
ino80	repB	F4Q6X3	F4QC84	SNF2-related domain-containing protein.	Transcription factor IIH subunit.	0.411
ino80	rvb2	F4Q6X3	F4PRM4	SNF2-related domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.721
ino80	wrn	F4Q6X3	F4PT39	SNF2-related domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.584
repB	DFA_04537	F4QC84	F4PPV3	Transcription factor IIH subunit.	ATP-dependent RNA helicase.	0.878
repB	ino80	F4QC84	F4Q6X3	Transcription factor IIH subunit.	SNF2-related domain-containing protein.	0.411
repB	wrn	F4QC84	F4PT39	Transcription factor IIH subunit.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.512
rvb2	ino80	F4PRM4	F4Q6X3	RuvB-like helicase; Belongs to the RuvB family.	SNF2-related domain-containing protein.	0.721