(11 nodes) Catalytic step 2 spliceosome network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_08826	U5 small nuclear ribonucleoprotein subunit. (136 aa)
	DFA_03689	RRM domain-containing protein. (128 aa)
	DFA_02550	Uncharacterized protein. (1422 aa)
	cwc2	Pre-mRNA-splicing factor cwc2. (487 aa)
	DFA_04271	Uncharacterized protein. (826 aa)
	cdc40	WD40 repeat-containing protein. (495 aa)
	xab2	TPR-like helical domain-containing protein. (1076 aa)
	DFA_11635	CCCH-type zinc finger-containing protein. (389 aa)
	CRNKL1	HAT repeat-containing protein. (669 aa)
	morg1	WD40 repeat-containing protein. (935 aa)
	DFA_08825	U5 small nuclear ribonucleoprotein subunit. (394 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRNKL1	DFA_03689	F4QD42	F4Q1Q2	HAT repeat-containing protein.	RRM domain-containing protein.	0.981
CRNKL1	DFA_08825	F4QD42	F4Q4H5	HAT repeat-containing protein.	U5 small nuclear ribonucleoprotein subunit.	0.914
CRNKL1	DFA_08826	F4QD42	F4Q4H6	HAT repeat-containing protein.	U5 small nuclear ribonucleoprotein subunit.	0.914
CRNKL1	DFA_11635	F4QD42	F4QDS7	HAT repeat-containing protein.	CCCH-type zinc finger-containing protein.	0.999
CRNKL1	cdc40	F4QD42	F4PGU0	HAT repeat-containing protein.	WD40 repeat-containing protein.	0.995
CRNKL1	xab2	F4QD42	F4QFR6	HAT repeat-containing protein.	TPR-like helical domain-containing protein.	0.999
DFA_02550	DFA_08825	F4PZP7	F4Q4H5	Uncharacterized protein.	U5 small nuclear ribonucleoprotein subunit.	0.902
DFA_02550	DFA_08826	F4PZP7	F4Q4H6	Uncharacterized protein.	U5 small nuclear ribonucleoprotein subunit.	0.902
DFA_02550	cdc40	F4PZP7	F4PGU0	Uncharacterized protein.	WD40 repeat-containing protein.	0.573
DFA_02550	xab2	F4PZP7	F4QFR6	Uncharacterized protein.	TPR-like helical domain-containing protein.	0.575
DFA_03689	CRNKL1	F4Q1Q2	F4QD42	RRM domain-containing protein.	HAT repeat-containing protein.	0.981
DFA_03689	DFA_08825	F4Q1Q2	F4Q4H5	RRM domain-containing protein.	U5 small nuclear ribonucleoprotein subunit.	0.719
DFA_03689	DFA_08826	F4Q1Q2	F4Q4H6	RRM domain-containing protein.	U5 small nuclear ribonucleoprotein subunit.	0.719
DFA_03689	DFA_11635	F4Q1Q2	F4QDS7	RRM domain-containing protein.	CCCH-type zinc finger-containing protein.	0.952
DFA_03689	cdc40	F4Q1Q2	F4PGU0	RRM domain-containing protein.	WD40 repeat-containing protein.	0.702
DFA_03689	xab2	F4Q1Q2	F4QFR6	RRM domain-containing protein.	TPR-like helical domain-containing protein.	0.999
DFA_04271	cdc40	F4PP40	F4PGU0	Uncharacterized protein.	WD40 repeat-containing protein.	0.413
DFA_08825	CRNKL1	F4Q4H5	F4QD42	U5 small nuclear ribonucleoprotein subunit.	HAT repeat-containing protein.	0.914
DFA_08825	DFA_02550	F4Q4H5	F4PZP7	U5 small nuclear ribonucleoprotein subunit.	Uncharacterized protein.	0.902
DFA_08825	DFA_03689	F4Q4H5	F4Q1Q2	U5 small nuclear ribonucleoprotein subunit.	RRM domain-containing protein.	0.719