(11 nodes) HAT (Half-A-TPR) repeat network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_09050	Uncharacterized protein. (1381 aa)
	DFA_02550	Uncharacterized protein. (1422 aa)
	DFA_01800	Uncharacterized protein. (1399 aa)
	DFA_06329	Uncharacterized protein. (1027 aa)
	xab2	TPR-like helical domain-containing protein. (1076 aa)
	utp6	U3 snoRNP protein. (711 aa)
	prpf6	TPR repeat-containing protein. (756 aa)
	CRNKL1	HAT repeat-containing protein. (669 aa)
	cstf3	Cleavage stimulation factor subunit 3. (997 aa)
	ctr9	RNA polymerase II complex component. (1047 aa)
	DFA_05618	HAT repeat-containing protein. (850 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRNKL1	xab2	F4QD42	F4QFR6	HAT repeat-containing protein.	TPR-like helical domain-containing protein.	0.999
DFA_02550	DFA_06329	F4PZP7	F4PKQ8	Uncharacterized protein.	Uncharacterized protein.	0.457
DFA_02550	xab2	F4PZP7	F4QFR6	Uncharacterized protein.	TPR-like helical domain-containing protein.	0.575
DFA_05618	utp6	F4PLR3	F4QED9	HAT repeat-containing protein.	U3 snoRNP protein.	0.918
DFA_06329	DFA_02550	F4PKQ8	F4PZP7	Uncharacterized protein.	Uncharacterized protein.	0.457
DFA_06329	prpf6	F4PKQ8	F4QDF3	Uncharacterized protein.	TPR repeat-containing protein.	0.457
prpf6	DFA_06329	F4QDF3	F4PKQ8	TPR repeat-containing protein.	Uncharacterized protein.	0.457
prpf6	xab2	F4QDF3	F4QFR6	TPR repeat-containing protein.	TPR-like helical domain-containing protein.	0.575
utp6	DFA_05618	F4QED9	F4PLR3	U3 snoRNP protein.	HAT repeat-containing protein.	0.918
xab2	CRNKL1	F4QFR6	F4QD42	TPR-like helical domain-containing protein.	HAT repeat-containing protein.	0.999
xab2	DFA_02550	F4QFR6	F4PZP7	TPR-like helical domain-containing protein.	Uncharacterized protein.	0.575
xab2	prpf6	F4QFR6	F4QDF3	TPR-like helical domain-containing protein.	TPR repeat-containing protein.	0.575