STRINGSTRING
DFA_11470 DFA_11470 DFA_02673 DFA_02673 sf3a2 sf3a2 DFA_01226 DFA_01226 snrpC snrpC DFA_00375 DFA_00375 DFA_11565 DFA_11565 DFA_11808 DFA_11808
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFA_11470C2H2-type domain-containing protein. (581 aa)
DFA_02673C2H2-type zinc finger-containing protein. (319 aa)
sf3a2U1-type zinc finger-containing protein. (276 aa)
DFA_01226Matrin-type domain-containing protein. (352 aa)
snrpCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (149 aa)
DFA_00375U1-type domain-containing protein. (339 aa)
DFA_11565C2H2-type zinc finger-containing protein. (368 aa)
DFA_11808C2H2-type domain-containing protein. (127 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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