(19 nodes) LSM domain superfamily network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_07364	Uncharacterized protein. (656 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
	snrpD3	Small nuclear ribonucleoprotein Sm D3. (170 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (98 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
	snrpD2	Small nuclear ribonucleoprotein Sm D2. (110 aa)
	lsm6	LSM domain-containing protein. (95 aa)
	lsm7	LSM domain-containing protein. (106 aa)
	DFA_03800	Putative transmembrane protein. (912 aa)
	DFA_02228	Adenosine deaminase acting on tRNA 1. (639 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	DFA_00950	Sm domain-containing protein. (97 aa)
	snrpD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (185 aa)
	snrpG	Small nuclear ribonucleoprotein G. (125 aa)
	DFA_00406	Sm domain-containing protein. (251 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	DFA_05515	Sm domain-containing protein. (897 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (162 aa)
	DFA_03448	Putative small nuclear ribonucleoparticle-associated protein. (160 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00950	lsm1	F4PUQ6	F4QAT2	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.458
DFA_00950	lsm2	F4PUQ6	F4PPB3	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.885
DFA_00950	lsm3	F4PUQ6	F4PV45	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.921
DFA_00950	lsm4	F4PUQ6	F4PIA5	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.921
DFA_00950	lsm5	F4PUQ6	F4QC48	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.881
DFA_00950	lsm6	F4PUQ6	F4Q3Z6	Sm domain-containing protein.	LSM domain-containing protein.	0.867
DFA_00950	lsm7	F4PUQ6	F4Q3X8	Sm domain-containing protein.	LSM domain-containing protein.	0.900
DFA_00950	lsm8	F4PUQ6	F4QEC3	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.876
DFA_00950	snrpD1	F4PUQ6	F4PU95	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.973
DFA_00950	snrpD2	F4PUQ6	F4QA52	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.975
DFA_00950	snrpD3	F4PUQ6	F4QCU4	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.975
DFA_00950	snrpG	F4PUQ6	F4PT76	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.969
DFA_07364	lsm1	F4PW77	F4QAT2	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.685
DFA_07364	lsm2	F4PW77	F4PPB3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.555
DFA_07364	lsm3	F4PW77	F4PV45	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.434
DFA_07364	lsm4	F4PW77	F4PIA5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.565
DFA_07364	lsm5	F4PW77	F4QC48	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.499
DFA_07364	lsm7	F4PW77	F4Q3X8	Uncharacterized protein.	LSM domain-containing protein.	0.420
lsm1	DFA_00950	F4QAT2	F4PUQ6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm domain-containing protein.	0.458
lsm1	DFA_07364	F4QAT2	F4PW77	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.685