41 items (Cavenderia fasciculata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_08841	Putative exoribonuclease. (626 aa)
	DFA_03585	C3H1-type domain-containing protein. (1749 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (162 aa)
	DFA_06449	3'-5' exoribonuclease. (246 aa)
	DFA_05992	Hypothetical ribonuclease II domain containing protein; Belongs to the RNR ribonuclease family. (1193 aa)
	DFA_06041	Putative caffeine-induced death protein 1. (968 aa)
	DFA_06092	Exosome complex exonuclease RRP4. (379 aa)
	DFA_06297	RNase_PH domain-containing protein. (329 aa)
	DFA_04838	Tetratricopeptide-like helical domain-containing protein. (1670 aa)
	DFA_05820	RNase_PH domain-containing protein. (307 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	DFA_00394	RNB domain-containing protein. (1187 aa)
	HBS1	Hsp70 subfamily B suppressor 1. (678 aa)
	DFA_01445	Uncharacterized protein. (946 aa)
	pan2	WD40-like domain-containing protein. (1093 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	DFA_07520	Putative mitotic control protein; Belongs to the RNR ribonuclease family. (1261 aa)
	DFA_06906	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (997 aa)
	DFA_06957	Uncharacterized protein. (1635 aa)
	DFA_00014	Uncharacterized protein. (294 aa)
	DFA_02494	C3H1-type domain-containing protein. (515 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...] (667 aa)
	DFA_08720	Uncharacterized protein. (688 aa)
	lsm7	LSM domain-containing protein. (106 aa)
	lsm6	LSM domain-containing protein. (95 aa)
	DFA_08842	Exoribonuclease. (263 aa)
	DFA_08149	Nudix hydrolase domain-containing protein. (657 aa)
	DFA_09264	PAP-associated domain-containing protein. (918 aa)
	DFA_10591	Ge1_WD40 domain-containing protein. (1190 aa)
	dcp2	mRNA-decapping enzyme 2. (740 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
	DFA_09864	RNB domain-containing protein. (1374 aa)
	DFA_10831	Cell differentiation family. (400 aa)
	DFA_10863	Putative exosome complex exonuclease RRP45. (469 aa)
	DFA_10935	Uncharacterized protein. (282 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (98 aa)
	DFA_11337	Putative nuclease. (286 aa)
	ddx6	Putative RNA helicase; Belongs to the DEAD box helicase family. (414 aa)
	wdr61	WD40 repeat-containing protein. (336 aa)
	DFA_11682	DEAD/DEAH box helicase. (1279 aa)
	DFA_11743	Exosome complex exonuclease rrp41. (244 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00014	DFA_00394	F4PXC7	F4PRN4	Uncharacterized protein.	RNB domain-containing protein.	0.773
DFA_00014	DFA_02494	F4PXC7	F4Q075	Uncharacterized protein.	C3H1-type domain-containing protein.	0.554
DFA_00014	DFA_03585	F4PXC7	F4PI53	Uncharacterized protein.	C3H1-type domain-containing protein.	0.773
DFA_00014	DFA_04838	F4PXC7	F4PM05	Uncharacterized protein.	Tetratricopeptide-like helical domain-containing protein.	0.862
DFA_00014	DFA_05820	F4PXC7	F4PMU2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.979
DFA_00014	DFA_05992	F4PXC7	F4PJT2	Uncharacterized protein.	Hypothetical ribonuclease II domain containing protein; Belongs to the RNR ribonuclease family.	0.773
DFA_00014	DFA_06092	F4PXC7	F4PK30	Uncharacterized protein.	Exosome complex exonuclease RRP4.	0.999
DFA_00014	DFA_06297	F4PXC7	F4PKM7	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
DFA_00014	DFA_06449	F4PXC7	F4PJ13	Uncharacterized protein.	3'-5' exoribonuclease.	0.999
DFA_00014	DFA_06906	F4PXC7	F4PX01	Uncharacterized protein.	RNB domain-containing protein; Belongs to the RNR ribonuclease family.	0.773
DFA_00014	DFA_07520	F4PXC7	F4PWN2	Uncharacterized protein.	Putative mitotic control protein; Belongs to the RNR ribonuclease family.	0.773
DFA_00014	DFA_08149	F4PXC7	F4Q5A6	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.626
DFA_00014	DFA_08841	F4PXC7	F4Q4J1	Uncharacterized protein.	Putative exoribonuclease.	0.773
DFA_00014	DFA_08842	F4PXC7	F4Q4J2	Uncharacterized protein.	Exoribonuclease.	0.849
DFA_00014	DFA_09864	F4PXC7	F4QAY2	Uncharacterized protein.	RNB domain-containing protein.	0.773
DFA_00014	DFA_10863	F4PXC7	F4QBL7	Uncharacterized protein.	Putative exosome complex exonuclease RRP45.	0.999
DFA_00014	DFA_10935	F4PXC7	F4QBT9	Uncharacterized protein.	Uncharacterized protein.	0.999
DFA_00014	DFA_11337	F4PXC7	F4QCE1	Uncharacterized protein.	Putative nuclease.	0.999
DFA_00014	DFA_11682	F4PXC7	F4QDX4	Uncharacterized protein.	DEAD/DEAH box helicase.	0.947
DFA_00014	DFA_11743	F4PXC7	F4QE35	Uncharacterized protein.	Exosome complex exonuclease rrp41.	0.977