(7 nodes) Nucleoporin FG repeat region network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_01365	Nsp1_C domain-containing protein. (643 aa)
	nup98	Putative nucleoporin 98. (1859 aa)
	DFA_03631	WD40-like domain-containing protein. (543 aa)
	DFA_07355	Uncharacterized protein. (3192 aa)
	DFA_02521	Nuclear pore protein. (609 aa)
	DFA_11965	Uncharacterized protein. (710 aa)
	DFA_11186	Uncharacterized protein. (2044 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_01365	DFA_02521	F4PSE9	F4PZL8	Nsp1_C domain-containing protein.	Nuclear pore protein.	0.998
DFA_01365	DFA_03631	F4PSE9	F4PIF3	Nsp1_C domain-containing protein.	WD40-like domain-containing protein.	0.529
DFA_01365	DFA_07355	F4PSE9	F4PW70	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.982
DFA_01365	DFA_11186	F4PSE9	F4QFB8	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.999
DFA_01365	DFA_11965	F4PSE9	F4QF42	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.982
DFA_01365	nup98	F4PSE9	F4PHX0	Nsp1_C domain-containing protein.	Putative nucleoporin 98.	0.529
DFA_02521	DFA_01365	F4PZL8	F4PSE9	Nuclear pore protein.	Nsp1_C domain-containing protein.	0.998
DFA_02521	DFA_03631	F4PZL8	F4PIF3	Nuclear pore protein.	WD40-like domain-containing protein.	0.529
DFA_02521	DFA_07355	F4PZL8	F4PW70	Nuclear pore protein.	Uncharacterized protein.	0.982
DFA_02521	DFA_11186	F4PZL8	F4QFB8	Nuclear pore protein.	Uncharacterized protein.	0.999
DFA_02521	DFA_11965	F4PZL8	F4QF42	Nuclear pore protein.	Uncharacterized protein.	0.982
DFA_02521	nup98	F4PZL8	F4PHX0	Nuclear pore protein.	Putative nucleoporin 98.	0.529
DFA_03631	DFA_01365	F4PIF3	F4PSE9	WD40-like domain-containing protein.	Nsp1_C domain-containing protein.	0.529
DFA_03631	DFA_02521	F4PIF3	F4PZL8	WD40-like domain-containing protein.	Nuclear pore protein.	0.529
DFA_03631	DFA_07355	F4PIF3	F4PW70	WD40-like domain-containing protein.	Uncharacterized protein.	0.529
DFA_03631	DFA_11186	F4PIF3	F4QFB8	WD40-like domain-containing protein.	Uncharacterized protein.	0.734
DFA_03631	DFA_11965	F4PIF3	F4QF42	WD40-like domain-containing protein.	Uncharacterized protein.	0.529
DFA_07355	DFA_01365	F4PW70	F4PSE9	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.982
DFA_07355	DFA_02521	F4PW70	F4PZL8	Uncharacterized protein.	Nuclear pore protein.	0.982
DFA_07355	DFA_03631	F4PW70	F4PIF3	Uncharacterized protein.	WD40-like domain-containing protein.	0.529