STRINGSTRING
pabpc1B pabpc1B lsm4 lsm4 DFA_06449 DFA_06449 enoA enoA DFA_06092 DFA_06092 DFA_06236 DFA_06236 DFA_06297 DFA_06297 DFA_04838 DFA_04838 DFA_05820 DFA_05820 mhsp70 mhsp70 btg btg lsm2 lsm2 hspA hspA DFA_01113 DFA_01113 pan2 pan2 pfkA pfkA ppk1 ppk1 lsm3 lsm3 DFA_07096 DFA_07096 pabpc1A pabpc1A DFA_07520 DFA_07520 DFA_00014 DFA_00014 DFA_02210 DFA_02210 DFA_02222 DFA_02222 DFA_02447 DFA_02447 PAN3 PAN3 DFA_07810 DFA_07810 lsm7 lsm7 lsm6 lsm6 DFA_07897 DFA_07897 DFA_08149 DFA_08149 DFA_09245 DFA_09245 DFA_09793 DFA_09793 dcp2 dcp2 lsm1 lsm1 DFA_10831 DFA_10831 DFA_10863 DFA_10863 DFA_10935 DFA_10935 lsm5 lsm5 DFA_11337 DFA_11337 ddx6 ddx6 wdr61 wdr61 DFA_11682 DFA_11682 DFA_11743 DFA_11743 xrn1 xrn1 lsm8 lsm8 DFA_11873 DFA_11873 DFA_11237 DFA_11237
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pabpc1BRNA-binding region RNP-1 domain-containing protein. (748 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (162 aa)
DFA_064493'-5' exoribonuclease. (246 aa)
enoAPhosphopyruvate hydratase. (436 aa)
DFA_06092Exosome complex exonuclease RRP4. (379 aa)
DFA_06236Putative CCR4-NOT complex subunit 1. (2350 aa)
DFA_06297RNase_PH domain-containing protein. (329 aa)
DFA_04838Tetratricopeptide-like helical domain-containing protein. (1670 aa)
DFA_05820RNase_PH domain-containing protein. (307 aa)
mhsp70Mitochondrial Hsp70; Belongs to the heat shock protein 70 family. (660 aa)
btgAnti-proliferative BTG domain-containing protein. (370 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
hspAChaperonin 60; Belongs to the chaperonin (HSP60) family. (558 aa)
DFA_01113NOT2/NOT3/NOT5 family protein. (774 aa)
pan2WD40-like domain-containing protein. (1093 aa)
pfkA6-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily. (785 aa)
ppk1Polyphosphate kinase. (1192 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
DFA_07096Uncharacterized protein. (800 aa)
pabpc1APolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (567 aa)
DFA_07520Putative mitotic control protein; Belongs to the RNR ribonuclease family. (1261 aa)
DFA_00014Uncharacterized protein. (294 aa)
DFA_02210NOT2/NOT3/NOT5 family protein. (530 aa)
DFA_02222PAP/25A-associated domain-containing protein. (695 aa)
DFA_02447Uncharacterized protein. (167 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...] (667 aa)
DFA_07810RING zinc finger-containing protein. (1244 aa)
lsm7LSM domain-containing protein. (106 aa)
lsm6LSM domain-containing protein. (95 aa)
DFA_07897Cell differentiation family protein. (329 aa)
DFA_08149Nudix hydrolase domain-containing protein. (657 aa)
DFA_09245CAF1 family protein. (405 aa)
DFA_09793Endonuclease/exonuclease/phosphatase domain-containing protein. (558 aa)
dcp2mRNA-decapping enzyme 2. (740 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
DFA_10831Cell differentiation family. (400 aa)
DFA_10863Putative exosome complex exonuclease RRP45. (469 aa)
DFA_10935Uncharacterized protein. (282 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (98 aa)
DFA_11337Putative nuclease. (286 aa)
ddx6Putative RNA helicase; Belongs to the DEAD box helicase family. (414 aa)
wdr61WD40 repeat-containing protein. (336 aa)
DFA_11682DEAD/DEAH box helicase. (1279 aa)
DFA_11743Exosome complex exonuclease rrp41. (244 aa)
xrn15'-3' exoribonuclease. (1808 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
DFA_11873DEAD/DEAH box helicase. (1058 aa)
DFA_11237Putative CCR4-NOT complex subunit 10. (929 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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