STRINGSTRING
AGI47084.1 AGI47084.1 AGI47016.1 AGI47016.1 AGI47018.1 AGI47018.1 rpl10 rpl10 rpl12 rpl12 AGI47067.1 AGI47067.1 AGI47069.1 AGI47069.1 rps28e rps28e rpl24e rpl24e rps6e rps6e AGI47148.1 AGI47148.1 AGI47156.1 AGI47156.1 rps2 rps2 AGI47214.1 AGI47214.1 AGI47259.1 AGI47259.1 rpl44e rpl44e AGI47330.1 AGI47330.1 rpl37ae rpl37ae rps10 rps10 rps4 rps4 AGI47434.1 AGI47434.1 AGI47454.1 AGI47454.1 AGI47463.1 AGI47463.1 rps24e rps24e rpl40e rpl40e AGI47567.1 AGI47567.1 AGI47618.1 AGI47618.1 AGI47668.1 AGI47668.1 dnaG dnaG AGI47676.1 AGI47676.1 AGI47687.1 AGI47687.1 dbh dbh AGI47713.1 AGI47713.1 rfcS rfcS AGI47718.1 AGI47718.1 AGI47721.1 AGI47721.1 AGI47882.1 AGI47882.1 rpl31e rpl31e rps19e rps19e AGI47957.1 AGI47957.1 AGI47960.1 AGI47960.1 AGI48104.1 AGI48104.1 top6A top6A rps3ae rps3ae AGI48296.1 AGI48296.1 rpl18 rpl18 rpl19e rpl19e rpl32e rpl32e rpl6 rpl6 rps4e rps4e rps17 rps17 rpl29 rpl29 rps3 rps3 rps19p rps19p rps9 rps9 AGI48386.1 AGI48386.1 rpl21e rpl21e AGI48418.1 AGI48418.1 AGI48423.1 AGI48423.1 flpA flpA pdxS pdxS rps17e rps17e AGI48489.1 AGI48489.1 priS priS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGI47084.1Glycosyltransferase, probably involved in cell wall biogenesis. (295 aa)
AGI47016.1Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (411 aa)
AGI47018.1Deoxycytidylate deaminase. (151 aa)
rpl10Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (334 aa)
rpl12LSU ribosomal protein L12AE; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (108 aa)
AGI47067.1Eukaryotic-type DNA primase, large subunit. (83 aa)
AGI47069.1Eukaryotic-type DNA primase, large subunit. (244 aa)
rps28eSSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rpl24eLSU ribosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. (79 aa)
rps6eSSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family. (133 aa)
AGI47148.1DNA modification methylase. (379 aa)
AGI47156.1Hypothetical protein. (131 aa)
rps2SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (208 aa)
AGI47214.1Ribulose 1,5-bisphosphate carboxylase, large subunit. (412 aa)
AGI47259.1Protein implicated in ribosomal biogenesis, Nop56p -like protein. (363 aa)
rpl44eLSU ribosomal protein L44E; Binds to the 23S rRNA. (92 aa)
AGI47330.1Exopolyphosphatase-related protein. (330 aa)
rpl37aeLSU ribosomal protein L37AE; Binds to the 23S rRNA. (92 aa)
rps10SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (105 aa)
rps4SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (220 aa)
AGI47434.1Small GTP-binding protein domain protein. (335 aa)
AGI47454.1Hypothetical protein. (112 aa)
AGI47463.1HD superfamily phosphohydrolase. (441 aa)
rps24eRibosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family. (103 aa)
rpl40eLSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
AGI47567.1Thiazole-phosphate synthase. (256 aa)
AGI47618.1TPR repeat protein, SEL1 subfamily. (445 aa)
AGI47668.1Regulator of competence-specific genes. (87 aa)
dnaGDNA primase (bacterial type); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (570 aa)
AGI47676.1DNA repair exonuclease. (399 aa)
AGI47687.1Hypothetical protein. (114 aa)
dbhNucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. (427 aa)
AGI47713.1Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (395 aa)
rfcSReplication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (318 aa)
AGI47718.1TPR repeat protein, SEL1 subfamily. (240 aa)
AGI47721.1Sel1 repeat protein. (222 aa)
AGI47882.1DNA polymerase III, delta subunit. (484 aa)
rpl31eLSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family. (87 aa)
rps19eSSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (143 aa)
AGI47957.1Cell division GTPase. (227 aa)
AGI47960.1Conserved hypothetical protein TIGR00266. (226 aa)
AGI48104.1DNA-(apurinic or apyrimidinic site) lyase/endonuclease III. (206 aa)
top6ADNA topoisomerase VI, subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (362 aa)
rps3aeRibosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (238 aa)
AGI48296.1SSU ribosomal protein S5P; Belongs to the universal ribosomal protein uS5 family. (213 aa)
rpl18LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (166 aa)
rpl19eLSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (153 aa)
rpl32eRibosomal protein L32E; Belongs to the eukaryotic ribosomal protein eL32 family. (224 aa)
rpl6LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (185 aa)
rps4eRibosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family. (234 aa)
rps17SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (112 aa)
rpl29LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (69 aa)
rps3SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (227 aa)
rps19pSSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (155 aa)
rps9SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (132 aa)
AGI48386.1Hypothetical protein. (345 aa)
rpl21eLSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
AGI48418.1LSU ribosomal protein L15E. (208 aa)
AGI48423.1Recombination protein MgsA. (451 aa)
flpArRNA 2'-O-methyltransferase fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (219 aa)
pdxSPyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (291 aa)
rps17eSSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa)
AGI48489.1Ribosomal protein L30E. (94 aa)
priSPutative DNA primase, eukaryotic-type, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extensi [...] (422 aa)
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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