(5 nodes) P-body assembly network (Naumovozyma castellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCAS0A14510	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (182 aa)
	NCAS0D04840	Uncharacterized protein. (902 aa)
	NCAS0E00900	Uncharacterized protein. (370 aa)
	NCAS0G03260	Uncharacterized protein. (573 aa)
	NCAS0A14060	Uncharacterized protein; Belongs to the DEAD box helicase family. (510 aa)

Your Current Organism:

Naumovozyma castellii

NCBI taxonomy Id: 1064592
Other names: N. castellii CBS 4309, Naumovozyma castellii CBS 4309

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCAS0A14060	NCAS0A14510	G0V915	G0V959	Uncharacterized protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.915
NCAS0A14060	NCAS0D04840	G0V915	G0VES4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.997
NCAS0A14060	NCAS0E00900	G0V915	G0VF95	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.996
NCAS0A14060	NCAS0G03260	G0V915	G0VIH8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.999
NCAS0A14510	NCAS0A14060	G0V959	G0V915	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.915
NCAS0A14510	NCAS0D04840	G0V959	G0VES4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
NCAS0A14510	NCAS0E00900	G0V959	G0VF95	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.542
NCAS0A14510	NCAS0G03260	G0V959	G0VIH8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.877
NCAS0D04840	NCAS0A14060	G0VES4	G0V915	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.997
NCAS0D04840	NCAS0A14510	G0VES4	G0V959	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
NCAS0D04840	NCAS0E00900	G0VES4	G0VF95	Uncharacterized protein.	Uncharacterized protein.	0.680
NCAS0D04840	NCAS0G03260	G0VES4	G0VIH8	Uncharacterized protein.	Uncharacterized protein.	0.961
NCAS0E00900	NCAS0A14060	G0VF95	G0V915	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.996
NCAS0E00900	NCAS0A14510	G0VF95	G0V959	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.542
NCAS0E00900	NCAS0D04840	G0VF95	G0VES4	Uncharacterized protein.	Uncharacterized protein.	0.680
NCAS0E00900	NCAS0G03260	G0VF95	G0VIH8	Uncharacterized protein.	Uncharacterized protein.	0.890
NCAS0G03260	NCAS0A14060	G0VIH8	G0V915	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
NCAS0G03260	NCAS0A14510	G0VIH8	G0V959	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.877
NCAS0G03260	NCAS0D04840	G0VIH8	G0VES4	Uncharacterized protein.	Uncharacterized protein.	0.961
NCAS0G03260	NCAS0E00900	G0VIH8	G0VF95	Uncharacterized protein.	Uncharacterized protein.	0.890