6 items (Naumovozyma castellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCAS0A09890	AAA domain-containing protein. (336 aa)
	NCAS0A10960	AAA domain-containing protein. (356 aa)
	NCAS0A08710	AAA domain-containing protein. (321 aa)
	NCAS0B01320	Replication factor C subunit 1. (871 aa)
	NCAS0A12300	AAA domain-containing protein. (350 aa)
	NCAS0G01450	AAA domain-containing protein. (569 aa)

Your Current Organism:

Naumovozyma castellii

NCBI taxonomy Id: 1064592
Other names: N. castellii CBS 4309, Naumovozyma castellii CBS 4309

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCAS0A08710	NCAS0A09890	G0V7I1	G0V7U9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A08710	NCAS0A10960	G0V7I1	G0V856	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A08710	NCAS0A12300	G0V7I1	G0V8I9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A08710	NCAS0B01320	G0V7I1	G0VB92	AAA domain-containing protein.	Replication factor C subunit 1.	0.999
NCAS0A09890	NCAS0A08710	G0V7U9	G0V7I1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A09890	NCAS0A10960	G0V7U9	G0V856	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A09890	NCAS0A12300	G0V7U9	G0V8I9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A09890	NCAS0B01320	G0V7U9	G0VB92	AAA domain-containing protein.	Replication factor C subunit 1.	0.999
NCAS0A10960	NCAS0A08710	G0V856	G0V7I1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A10960	NCAS0A09890	G0V856	G0V7U9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A10960	NCAS0A12300	G0V856	G0V8I9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A10960	NCAS0B01320	G0V856	G0VB92	AAA domain-containing protein.	Replication factor C subunit 1.	0.999
NCAS0A12300	NCAS0A08710	G0V8I9	G0V7I1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A12300	NCAS0A09890	G0V8I9	G0V7U9	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A12300	NCAS0A10960	G0V8I9	G0V856	AAA domain-containing protein.	AAA domain-containing protein.	0.999
NCAS0A12300	NCAS0B01320	G0V8I9	G0VB92	AAA domain-containing protein.	Replication factor C subunit 1.	0.999
NCAS0B01320	NCAS0A08710	G0VB92	G0V7I1	Replication factor C subunit 1.	AAA domain-containing protein.	0.999
NCAS0B01320	NCAS0A09890	G0VB92	G0V7U9	Replication factor C subunit 1.	AAA domain-containing protein.	0.999
NCAS0B01320	NCAS0A10960	G0VB92	G0V856	Replication factor C subunit 1.	AAA domain-containing protein.	0.999
NCAS0B01320	NCAS0A12300	G0VB92	G0V8I9	Replication factor C subunit 1.	AAA domain-containing protein.	0.999