(19 nodes) Sm domain network (Naumovozyma castellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCAS0A14510	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (182 aa)
	NCAS0A11810	Sm domain-containing protein. (83 aa)
	NCAS0A08500	Sm domain-containing protein. (100 aa)
	NCAS0A03890	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
	NCAS0H02460	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	NCAS0J01950	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (84 aa)
	NCAS0D02930	Small nuclear ribonucleoprotein Sm D2. (110 aa)
	NCAS0G03260	Uncharacterized protein. (573 aa)
	NCAS0G02400	AD domain-containing protein. (195 aa)
	NCAS0F03750	Sm domain-containing protein. (167 aa)
	NCAS0E00900	Uncharacterized protein. (370 aa)
	NCAS0D01690	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (136 aa)
	NCAS0C03930	Small nuclear ribonucleoprotein G. (76 aa)
	NCAS0C03090	Small nuclear ribonucleoprotein Sm D3. (102 aa)
	NCAS0B04420	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	NCAS0B07110	Sm domain-containing protein. (75 aa)
	NCAS0B07980	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
	NCAS0B05250	Sm domain-containing protein. (152 aa)
	NCAS0A15220	Sm domain-containing protein. (74 aa)

Your Current Organism:

Naumovozyma castellii

NCBI taxonomy Id: 1064592
Other names: N. castellii CBS 4309, Naumovozyma castellii CBS 4309

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCAS0A03890	NCAS0A08500	G0V656	G0V7G0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.913
NCAS0A03890	NCAS0A11810	G0V656	G0V8E1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.999
NCAS0A03890	NCAS0A14510	G0V656	G0V959	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
NCAS0A03890	NCAS0A15220	G0V656	G0V9C9	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.988
NCAS0A03890	NCAS0B04420	G0V656	G0VAK0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
NCAS0A03890	NCAS0B05250	G0V656	G0V9J3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.949
NCAS0A03890	NCAS0B07110	G0V656	G0VA65	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.999
NCAS0A03890	NCAS0B07980	G0V656	G0VAF2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
NCAS0A03890	NCAS0C03090	G0V656	G0VCT9	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.993
NCAS0A03890	NCAS0C03930	G0V656	G0VD21	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.948
NCAS0A03890	NCAS0D01690	G0V656	G0VDW0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
NCAS0A03890	NCAS0D02930	G0V656	G0VE83	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.992
NCAS0A03890	NCAS0E00900	G0V656	G0VF95	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.487
NCAS0A03890	NCAS0F03750	G0V656	G0VH86	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.955
NCAS0A03890	NCAS0G02400	G0V656	G0VI92	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	AD domain-containing protein.	0.474
NCAS0A03890	NCAS0G03260	G0V656	G0VIH8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.752
NCAS0A03890	NCAS0H02460	G0V656	G0VJ77	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.987
NCAS0A03890	NCAS0J01950	G0V656	G0VKY6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
NCAS0A08500	NCAS0A03890	G0V7G0	G0V656	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.913
NCAS0A08500	NCAS0A11810	G0V7G0	G0V8E1	Sm domain-containing protein.	Sm domain-containing protein.	0.907