37 items (Naumovozyma castellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCAS0A00660	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2223 aa)
	NCAS0A03720	Uncharacterized protein. (779 aa)
	NCAS0A07930	RNA polymerase II transcription factor B subunit 3; Acts as component of the general transcription and DNA repair factor IIH (TFIIH or factor B), which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. (327 aa)
	NCAS0A08310	Uncharacterized protein. (424 aa)
	NCAS0A08380	Uncharacterized protein. (1079 aa)
	NCAS0A08710	AAA domain-containing protein. (321 aa)
	NCAS0A09230	Uncharacterized protein. (170 aa)
	NCAS0A09440	Uncharacterized protein. (1147 aa)
	NCAS0A09890	AAA domain-containing protein. (336 aa)
	NCAS0A10500	WD_REPEATS_REGION domain-containing protein. (478 aa)
	NCAS0A10960	AAA domain-containing protein. (356 aa)
	NCAS0A11040	Uncharacterized protein. (338 aa)
	NCAS0A12300	AAA domain-containing protein. (350 aa)
	NCAS0A14110	DNA ligase. (753 aa)
	NCAS0A14650	CYCLIN domain-containing protein; Belongs to the cyclin family. (374 aa)
	NCAS0A15150	DNA_pol_E_B domain-containing protein. (715 aa)
	NCAS0B04860	Helicase ATP-binding domain-containing protein. (774 aa)
	NCAS0B05920	DNA polymerase. (1099 aa)
	NCAS0B06000	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (312 aa)
	NCAS0B04150	Uncharacterized protein. (72 aa)
	NCAS0B07510	Uncharacterized protein. (246 aa)
	NCAS0B01320	Replication factor C subunit 1. (871 aa)
	NCAS0B03750	CBFD_NFYB_HMF domain-containing protein. (204 aa)
	NCAS0C00180	Uncharacterized protein. (205 aa)
	NCAS0C01390	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (516 aa)
	NCAS0C02540	ERCC4 domain-containing protein. (1093 aa)
	NCAS0C04480	RING-type domain-containing protein. (109 aa)
	NCAS0C04500	Uncharacterized protein. (279 aa)
	NCAS0D01980	Uncharacterized protein. (473 aa)
	NCAS0D02890	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (485 aa)
	NCAS0D04320	XPA_C domain-containing protein. (350 aa)
	NCAS0E03950	Uncharacterized protein. (1000 aa)
	NCAS0G04120	Uncharacterized protein. (392 aa)
	NCAS0G00290	Uncharacterized protein. (837 aa)
	NCAS0H01700	Uncharacterized protein. (631 aa)
	NCAS0I01270	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	NCAS0J01120	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (613 aa)

Your Current Organism:

Naumovozyma castellii

NCBI taxonomy Id: 1064592
Other names: N. castellii CBS 4309, Naumovozyma castellii CBS 4309

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCAS0A00660	NCAS0A08310	G0V590	G0V7E1	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.674
NCAS0A00660	NCAS0A08710	G0V590	G0V7I1	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.810
NCAS0A00660	NCAS0A09230	G0V590	G0V7N3	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.992
NCAS0A00660	NCAS0A09890	G0V590	G0V7U9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.799
NCAS0A00660	NCAS0A10960	G0V590	G0V856	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.881
NCAS0A00660	NCAS0A11040	G0V590	G0V864	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.501
NCAS0A00660	NCAS0A12300	G0V590	G0V8I9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.886
NCAS0A00660	NCAS0A14110	G0V590	G0V919	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA ligase.	0.900
NCAS0A00660	NCAS0A15150	G0V590	G0V9C2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA_pol_E_B domain-containing protein.	0.999
NCAS0A00660	NCAS0B01320	G0V590	G0VB92	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Replication factor C subunit 1.	0.869
NCAS0A00660	NCAS0B03750	G0V590	G0VBY2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	CBFD_NFYB_HMF domain-containing protein.	0.999
NCAS0A00660	NCAS0B04860	G0V590	G0V9F4	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Helicase ATP-binding domain-containing protein.	0.483
NCAS0A00660	NCAS0B05920	G0V590	G0V9Q9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.960
NCAS0A00660	NCAS0B07510	G0V590	G0VAA5	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.992
NCAS0A00660	NCAS0C00180	G0V590	G0VC01	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.441
NCAS0A00660	NCAS0C02540	G0V590	G0VCN4	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	ERCC4 domain-containing protein.	0.672
NCAS0A00660	NCAS0C04480	G0V590	G0VD76	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	RING-type domain-containing protein.	0.772
NCAS0A00660	NCAS0C04500	G0V590	G0VD78	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.851
NCAS0A00660	NCAS0D01980	G0V590	G0VDY9	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.964
NCAS0A00660	NCAS0D02890	G0V590	G0VE79	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.499