(25 nodes) MAPK cascade, and E3 ubiquitin-protein ligase KEG network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_042132	Uncharacterized protein. (102 aa)
	C1H46_040413	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (373 aa)
	C1H46_039464	Protein kinase domain-containing protein. (264 aa)
	C1H46_038443	Uncharacterized protein. (710 aa)
	C1H46_038444	Uncharacterized protein. (1360 aa)
	C1H46_035432	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (360 aa)
	C1H46_035490	Uncharacterized protein. (1043 aa)
	C1H46_034250	Protein kinase domain-containing protein. (180 aa)
	C1H46_032545	Uncharacterized protein. (55 aa)
	C1H46_029321	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (295 aa)
	C1H46_026701	Mitogen-activated protein kinase. (558 aa)
	C1H46_025951	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (406 aa)
	C1H46_025515	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (291 aa)
	C1H46_023064	Protein kinase domain-containing protein. (597 aa)
	C1H46_022160	Uncharacterized protein. (1079 aa)
	C1H46_019013	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (387 aa)
	C1H46_015183	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (367 aa)
	C1H46_014460	Protein kinase domain-containing protein. (531 aa)
	C1H46_012854	Uncharacterized protein. (143 aa)
	C1H46_011992	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (360 aa)
	C1H46_009629	Protein kinase domain-containing protein. (299 aa)
	C1H46_007396	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (377 aa)
	C1H46_007262	Uncharacterized protein. (114 aa)
	C1H46_004112	Uncharacterized protein. (1535 aa)
	C1H46_002883	Uncharacterized protein. (374 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002883	C1H46_007262	A0A540NKE9	A0A540N869	Uncharacterized protein.	Uncharacterized protein.	0.571
C1H46_002883	C1H46_007396	A0A540NKE9	A0A540N7I9	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.840
C1H46_002883	C1H46_009629	A0A540NKE9	A0A540N148	Uncharacterized protein.	Protein kinase domain-containing protein.	0.475
C1H46_002883	C1H46_011992	A0A540NKE9	A0A540MVS9	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.475
C1H46_002883	C1H46_012854	A0A540NKE9	A0A540MRU5	Uncharacterized protein.	Uncharacterized protein.	0.571
C1H46_002883	C1H46_015183	A0A540NKE9	A0A540MK63	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.840
C1H46_002883	C1H46_019013	A0A540NKE9	A0A540M9G6	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.840
C1H46_002883	C1H46_022160	A0A540NKE9	A0A540M0P3	Uncharacterized protein.	Uncharacterized protein.	0.711
C1H46_002883	C1H46_025951	A0A540NKE9	A0A540LPV8	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.870
C1H46_002883	C1H46_026701	A0A540NKE9	A0A540LMR9	Uncharacterized protein.	Mitogen-activated protein kinase.	0.840
C1H46_002883	C1H46_029321	A0A540NKE9	A0A540LF95	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.475
C1H46_002883	C1H46_032545	A0A540NKE9	A0A540L5Z8	Uncharacterized protein.	Uncharacterized protein.	0.840
C1H46_002883	C1H46_034250	A0A540NKE9	A0A540L133	Uncharacterized protein.	Protein kinase domain-containing protein.	0.870
C1H46_002883	C1H46_035432	A0A540NKE9	A0A540KXJ4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.475
C1H46_002883	C1H46_035490	A0A540NKE9	A0A540KXR4	Uncharacterized protein.	Uncharacterized protein.	0.711
C1H46_002883	C1H46_039464	A0A540NKE9	A0A540KL99	Uncharacterized protein.	Protein kinase domain-containing protein.	0.840
C1H46_002883	C1H46_040413	A0A540NKE9	A0A540KIM8	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.840
C1H46_002883	C1H46_042132	A0A540NKE9	A0A540KDN1	Uncharacterized protein.	Uncharacterized protein.	0.571
C1H46_004112	C1H46_007262	A0A540NI53	A0A540N869	Uncharacterized protein.	Uncharacterized protein.	0.961
C1H46_004112	C1H46_007396	A0A540NI53	A0A540N7I9	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.673