(5 nodes) Mixed, incl. Leucine rich repeat network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_038499	Uncharacterized protein. (221 aa)
	C1H46_035711	Uncharacterized protein. (193 aa)
	C1H46_034126	LRRNT_2 domain-containing protein. (183 aa)
	C1H46_024398	Uncharacterized protein. (184 aa)
	C1H46_014246	Uncharacterized protein. (270 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_014246	C1H46_024398	A0A540MMU9	A0A540LUA2	Uncharacterized protein.	Uncharacterized protein.	0.477
C1H46_014246	C1H46_034126	A0A540MMU9	A0A540L1J2	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.491
C1H46_014246	C1H46_035711	A0A540MMU9	A0A540KWX3	Uncharacterized protein.	Uncharacterized protein.	0.572
C1H46_014246	C1H46_038499	A0A540MMU9	A0A540KP14	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_024398	C1H46_014246	A0A540LUA2	A0A540MMU9	Uncharacterized protein.	Uncharacterized protein.	0.477
C1H46_024398	C1H46_034126	A0A540LUA2	A0A540L1J2	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.517
C1H46_024398	C1H46_035711	A0A540LUA2	A0A540KWX3	Uncharacterized protein.	Uncharacterized protein.	0.556
C1H46_024398	C1H46_038499	A0A540LUA2	A0A540KP14	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_034126	C1H46_014246	A0A540L1J2	A0A540MMU9	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.491
C1H46_034126	C1H46_024398	A0A540L1J2	A0A540LUA2	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.517
C1H46_034126	C1H46_038499	A0A540L1J2	A0A540KP14	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.512
C1H46_035711	C1H46_014246	A0A540KWX3	A0A540MMU9	Uncharacterized protein.	Uncharacterized protein.	0.572
C1H46_035711	C1H46_024398	A0A540KWX3	A0A540LUA2	Uncharacterized protein.	Uncharacterized protein.	0.556
C1H46_035711	C1H46_038499	A0A540KWX3	A0A540KP14	Uncharacterized protein.	Uncharacterized protein.	0.505
C1H46_038499	C1H46_014246	A0A540KP14	A0A540MMU9	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_038499	C1H46_024398	A0A540KP14	A0A540LUA2	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_038499	C1H46_034126	A0A540KP14	A0A540L1J2	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.512
C1H46_038499	C1H46_035711	A0A540KP14	A0A540KWX3	Uncharacterized protein.	Uncharacterized protein.	0.505