(5 nodes) Mixed, incl. DDX52/Rok1, DEAD-box helicase domain, and Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_036732	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	C1H46_025859	Uncharacterized protein. (439 aa)
	C1H46_008989	Uncharacterized protein. (751 aa)
	C1H46_008720	Uncharacterized protein. (104 aa)
	C1H46_005015	Uncharacterized protein. (539 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_005015	C1H46_008720	A0A540NEC1	A0A540N3T1	Uncharacterized protein.	Uncharacterized protein.	0.989
C1H46_005015	C1H46_008989	A0A540NEC1	A0A540N311	Uncharacterized protein.	Uncharacterized protein.	0.857
C1H46_005015	C1H46_025859	A0A540NEC1	A0A540LQS3	Uncharacterized protein.	Uncharacterized protein.	0.903
C1H46_005015	C1H46_036732	A0A540NEC1	A0A540KU80	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.943
C1H46_008720	C1H46_005015	A0A540N3T1	A0A540NEC1	Uncharacterized protein.	Uncharacterized protein.	0.989
C1H46_008720	C1H46_008989	A0A540N3T1	A0A540N311	Uncharacterized protein.	Uncharacterized protein.	0.990
C1H46_008720	C1H46_025859	A0A540N3T1	A0A540LQS3	Uncharacterized protein.	Uncharacterized protein.	0.989
C1H46_008720	C1H46_036732	A0A540N3T1	A0A540KU80	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.997
C1H46_008989	C1H46_005015	A0A540N311	A0A540NEC1	Uncharacterized protein.	Uncharacterized protein.	0.857
C1H46_008989	C1H46_008720	A0A540N311	A0A540N3T1	Uncharacterized protein.	Uncharacterized protein.	0.990
C1H46_008989	C1H46_025859	A0A540N311	A0A540LQS3	Uncharacterized protein.	Uncharacterized protein.	0.799
C1H46_008989	C1H46_036732	A0A540N311	A0A540KU80	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.953
C1H46_025859	C1H46_005015	A0A540LQS3	A0A540NEC1	Uncharacterized protein.	Uncharacterized protein.	0.903
C1H46_025859	C1H46_008720	A0A540LQS3	A0A540N3T1	Uncharacterized protein.	Uncharacterized protein.	0.989
C1H46_025859	C1H46_008989	A0A540LQS3	A0A540N311	Uncharacterized protein.	Uncharacterized protein.	0.799
C1H46_025859	C1H46_036732	A0A540LQS3	A0A540KU80	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.921
C1H46_036732	C1H46_005015	A0A540KU80	A0A540NEC1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.943
C1H46_036732	C1H46_008720	A0A540KU80	A0A540N3T1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.997
C1H46_036732	C1H46_008989	A0A540KU80	A0A540N311	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.953
C1H46_036732	C1H46_025859	A0A540KU80	A0A540LQS3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.921