(23 nodes) U4/U6 x U5 tri-snRNP complex, and PROCT (NUC072) domain network (Malus baccata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	C1H46_041714	Uncharacterized protein. (2180 aa)
	C1H46_037125	Nop domain-containing protein. (485 aa)
	C1H46_032139	Uncharacterized protein. (371 aa)
	C1H46_031430	Uncharacterized protein. (257 aa)
	C1H46_029193	TPR_REGION domain-containing protein. (468 aa)
	C1H46_025350	Uncharacterized protein. (934 aa)
	C1H46_024253	MPN domain-containing protein. (183 aa)
	C1H46_024050	Uncharacterized protein. (142 aa)
	C1H46_021517	Uncharacterized protein. (53 aa)
	LSM8-2	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	C1H46_020009	Uncharacterized protein. (151 aa)
	C1H46_019434	Sm domain-containing protein. (66 aa)
	LSM5-2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	LSM3-2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	C1H46_009991	Small nuclear ribonucleoprotein Sm D2. (116 aa)
	C1H46_006074	Sm domain-containing protein. (99 aa)
	C1H46_004103	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (203 aa)
	C1H46_004134	Uncharacterized protein. (150 aa)
	C1H46_003329	Uncharacterized protein. (795 aa)
	C1H46_002658	WD_REPEATS_REGION domain-containing protein. (542 aa)
	C1H46_001831	Uncharacterized protein. (296 aa)
	C1H46_000666	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	C1H46_000379	Sm domain-containing protein. (56 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_000379	C1H46_000666	A0A540NSG8	A0A540NRM2	Sm domain-containing protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.998
C1H46_000379	C1H46_001831	A0A540NSG8	A0A540NNK2	Sm domain-containing protein.	Uncharacterized protein.	0.986
C1H46_000379	C1H46_002658	A0A540NSG8	A0A540NLB6	Sm domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.967
C1H46_000379	C1H46_003329	A0A540NSG8	A0A540NJ76	Sm domain-containing protein.	Uncharacterized protein.	0.972
C1H46_000379	C1H46_004103	A0A540NSG8	A0A540NGU7	Sm domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.985
C1H46_000379	C1H46_004134	A0A540NSG8	A0A540NGY6	Sm domain-containing protein.	Uncharacterized protein.	0.986
C1H46_000379	C1H46_006074	A0A540NSG8	A0A540NB74	Sm domain-containing protein.	Sm domain-containing protein.	0.994
C1H46_000379	C1H46_009991	A0A540NSG8	A0A540N002	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
C1H46_000379	C1H46_019434	A0A540NSG8	A0A540M8Z2	Sm domain-containing protein.	Sm domain-containing protein.	0.999
C1H46_000379	C1H46_020009	A0A540NSG8	A0A540M6J1	Sm domain-containing protein.	Uncharacterized protein.	0.981
C1H46_000379	C1H46_021517	A0A540NSG8	A0A540M2B5	Sm domain-containing protein.	Uncharacterized protein.	0.980
C1H46_000379	C1H46_024050	A0A540NSG8	A0A540LV87	Sm domain-containing protein.	Uncharacterized protein.	0.981
C1H46_000379	C1H46_024253	A0A540NSG8	A0A540LUP5	Sm domain-containing protein.	MPN domain-containing protein.	0.980
C1H46_000379	C1H46_025350	A0A540NSG8	A0A540LRJ9	Sm domain-containing protein.	Uncharacterized protein.	0.961
C1H46_000379	C1H46_029193	A0A540NSG8	A0A540LFN9	Sm domain-containing protein.	TPR_REGION domain-containing protein.	0.999
C1H46_000379	C1H46_031430	A0A540NSG8	A0A540L923	Sm domain-containing protein.	Uncharacterized protein.	0.972
C1H46_000379	C1H46_032139	A0A540NSG8	A0A540L736	Sm domain-containing protein.	Uncharacterized protein.	0.967
C1H46_000379	C1H46_037125	A0A540NSG8	A0A540KT36	Sm domain-containing protein.	Nop domain-containing protein.	0.980
C1H46_000379	C1H46_041714	A0A540NSG8	A0A540KET7	Sm domain-containing protein.	Uncharacterized protein.	0.976
C1H46_000379	LSM3-2	A0A540NSG8	A0A540MVZ1	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997