(60 nodes) Mixed, incl. Plant protein of unknown function, and Dehydrin, conserved site network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_044625	Uncharacterized protein. (140 aa)
	C1H46_044585	Uncharacterized protein. (485 aa)
	C1H46_044128	Uncharacterized protein. (963 aa)
	C1H46_043724	Uncharacterized protein. (449 aa)
	C1H46_043438	Lectin_legB domain-containing protein; Belongs to the leguminous lectin family. (148 aa)
	C1H46_042211	Uncharacterized protein; Belongs to the plant LTP family. (122 aa)
	C1H46_041092	Uncharacterized protein. (196 aa)
	C1H46_041004	Uncharacterized protein. (162 aa)
	C1H46_040554	Uncharacterized protein. (204 aa)
	C1H46_040266	Uncharacterized protein. (133 aa)
	C1H46_038559	Uncharacterized protein. (122 aa)
	C1H46_037759	Uncharacterized protein. (184 aa)
	C1H46_036196	Uncharacterized protein. (757 aa)
	C1H46_036213	Uncharacterized protein. (679 aa)
	C1H46_036155	Uncharacterized protein. (453 aa)
	C1H46_035859	AAI domain-containing protein; Belongs to the plant LTP family. (119 aa)
	C1H46_035861	AAI domain-containing protein; Belongs to the plant LTP family. (115 aa)
	C1H46_035783	Uncharacterized protein. (440 aa)
	C1H46_034801	Uncharacterized protein. (235 aa)
	C1H46_035004	Uncharacterized protein. (231 aa)
	C1H46_033498	Uncharacterized protein. (222 aa)
	C1H46_033028	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (155 aa)
	C1H46_031607	Uncharacterized protein. (137 aa)
	C1H46_031622	Uncharacterized protein. (259 aa)
	C1H46_031121	LEA_2 domain-containing protein. (174 aa)
	C1H46_031126	Uncharacterized protein. (157 aa)
	C1H46_030004	Uncharacterized protein. (156 aa)
	C1H46_027710	Uncharacterized protein. (234 aa)
	C1H46_027686	Uncharacterized protein. (460 aa)
	C1H46_026097	DUF3700 domain-containing protein. (140 aa)
	C1H46_024990	LEA_2 domain-containing protein. (277 aa)
	C1H46_023039	NAB domain-containing protein. (1098 aa)
	C1H46_021105	AAI domain-containing protein; Belongs to the plant LTP family. (120 aa)
	C1H46_021141	Uncharacterized protein. (753 aa)
	C1H46_019924	Usp domain-containing protein. (197 aa)
	C1H46_020171	DUF4408 domain-containing protein. (359 aa)
	C1H46_019679	Uncharacterized protein. (142 aa)
	C1H46_018054	Uncharacterized protein. (197 aa)
	C1H46_018305	WAK_assoc domain-containing protein. (264 aa)
	C1H46_016102	LEA_2 domain-containing protein. (223 aa)
	C1H46_015017	Uncharacterized protein. (216 aa)
	C1H46_014446	Uncharacterized protein. (446 aa)
	C1H46_014222	Uncharacterized protein. (455 aa)
	C1H46_014326	Gnk2-homologous domain-containing protein. (146 aa)
	C1H46_013663	Uncharacterized protein. (276 aa)
	C1H46_013664	Uncharacterized protein. (219 aa)
	C1H46_012803	Uncharacterized protein. (449 aa)
	C1H46_012196	Uncharacterized protein. (241 aa)
	C1H46_011918	Uncharacterized protein. (261 aa)
	C1H46_009777	Uncharacterized protein. (176 aa)
	C1H46_008504	Uncharacterized protein. (253 aa)
	C1H46_008454	Uncharacterized protein. (198 aa)
	C1H46_007761	Uncharacterized protein. (203 aa)
	C1H46_006726	Uncharacterized protein. (220 aa)
	C1H46_006823	Uncharacterized protein; Belongs to the plant dehydrin family. (277 aa)
	C1H46_006666	Uncharacterized protein. (253 aa)
	C1H46_005832	Usp domain-containing protein. (440 aa)
	C1H46_004859	Uncharacterized protein; Belongs to the plant dehydrin family. (172 aa)
	C1H46_004123	Uncharacterized protein. (167 aa)
	C1H46_002657	Uncharacterized protein. (330 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002657	C1H46_004123	A0A540NLB5	A0A540NGX4	Uncharacterized protein.	Uncharacterized protein.	0.517
C1H46_002657	C1H46_004859	A0A540NLB5	A0A540NEQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the plant dehydrin family.	0.448
C1H46_002657	C1H46_005832	A0A540NLB5	A0A540NBW1	Uncharacterized protein.	Usp domain-containing protein.	0.514
C1H46_002657	C1H46_006666	A0A540NLB5	A0A540NAX1	Uncharacterized protein.	Uncharacterized protein.	0.461
C1H46_002657	C1H46_008454	A0A540NLB5	A0A540N607	Uncharacterized protein.	Uncharacterized protein.	0.447
C1H46_002657	C1H46_009777	A0A540NLB5	A0A540N0P2	Uncharacterized protein.	Uncharacterized protein.	0.473
C1H46_002657	C1H46_011918	A0A540NLB5	A0A540MVY0	Uncharacterized protein.	Uncharacterized protein.	0.526
C1H46_002657	C1H46_012196	A0A540NLB5	A0A540MTS0	Uncharacterized protein.	Uncharacterized protein.	0.498
C1H46_002657	C1H46_012803	A0A540NLB5	A0A540MTM7	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_002657	C1H46_014326	A0A540NLB5	A0A540MPC1	Uncharacterized protein.	Gnk2-homologous domain-containing protein.	0.511
C1H46_002657	C1H46_014446	A0A540NLB5	A0A540MNY6	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_002657	C1H46_015017	A0A540NLB5	A0A540MLV0	Uncharacterized protein.	Uncharacterized protein.	0.572
C1H46_002657	C1H46_016102	A0A540NLB5	A0A540MHQ8	Uncharacterized protein.	LEA_2 domain-containing protein.	0.465
C1H46_002657	C1H46_018054	A0A540NLB5	A0A540MC60	Uncharacterized protein.	Uncharacterized protein.	0.505
C1H46_002657	C1H46_019924	A0A540NLB5	A0A540M6Q9	Uncharacterized protein.	Usp domain-containing protein.	0.422
C1H46_002657	C1H46_021105	A0A540NLB5	A0A540M3G9	Uncharacterized protein.	AAI domain-containing protein; Belongs to the plant LTP family.	0.411
C1H46_002657	C1H46_021141	A0A540NLB5	A0A540M3H8	Uncharacterized protein.	Uncharacterized protein.	0.414
C1H46_002657	C1H46_027686	A0A540NLB5	A0A540LK19	Uncharacterized protein.	Uncharacterized protein.	0.467
C1H46_002657	C1H46_030004	A0A540NLB5	A0A540LDC8	Uncharacterized protein.	Uncharacterized protein.	0.413
C1H46_002657	C1H46_031121	A0A540NLB5	A0A540LA16	Uncharacterized protein.	LEA_2 domain-containing protein.	0.438