(10 nodes) Mixed, incl. Petal formation-expressed, and Embryo-specific ATS3 network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_045038	Uncharacterized protein. (132 aa)
	C1H46_044323	Uncharacterized protein. (89 aa)
	C1H46_043101	PLAT domain-containing protein. (107 aa)
	C1H46_037626	GOLD domain-containing protein. (113 aa)
	C1H46_035814	Uncharacterized protein. (423 aa)
	C1H46_028922	Uncharacterized protein. (85 aa)
	C1H46_026480	Uncharacterized protein. (78 aa)
	C1H46_023867	Uncharacterized protein. (146 aa)
	C1H46_013110	Uncharacterized protein. (88 aa)
	C1H46_013113	Uncharacterized protein. (477 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_013110	C1H46_013113	A0A540MR79	A0A540MR86	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_013110	C1H46_023867	A0A540MR79	A0A540LVN9	Uncharacterized protein.	Uncharacterized protein.	0.568
C1H46_013110	C1H46_026480	A0A540MR79	A0A540LNY8	Uncharacterized protein.	Uncharacterized protein.	0.467
C1H46_013110	C1H46_028922	A0A540MR79	A0A540LGC2	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_013110	C1H46_035814	A0A540MR79	A0A540KWI5	Uncharacterized protein.	Uncharacterized protein.	0.576
C1H46_013110	C1H46_037626	A0A540MR79	A0A540KRJ0	Uncharacterized protein.	GOLD domain-containing protein.	0.533
C1H46_013110	C1H46_043101	A0A540MR79	A0A540KAV2	Uncharacterized protein.	PLAT domain-containing protein.	0.611
C1H46_013110	C1H46_044323	A0A540MR79	A0A540K7D9	Uncharacterized protein.	Uncharacterized protein.	0.536
C1H46_013110	C1H46_045038	A0A540MR79	A0A540K5B7	Uncharacterized protein.	Uncharacterized protein.	0.515
C1H46_013113	C1H46_013110	A0A540MR86	A0A540MR79	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_013113	C1H46_023867	A0A540MR86	A0A540LVN9	Uncharacterized protein.	Uncharacterized protein.	0.620
C1H46_013113	C1H46_026480	A0A540MR86	A0A540LNY8	Uncharacterized protein.	Uncharacterized protein.	0.525
C1H46_013113	C1H46_028922	A0A540MR86	A0A540LGC2	Uncharacterized protein.	Uncharacterized protein.	0.551
C1H46_013113	C1H46_035814	A0A540MR86	A0A540KWI5	Uncharacterized protein.	Uncharacterized protein.	0.498
C1H46_013113	C1H46_037626	A0A540MR86	A0A540KRJ0	Uncharacterized protein.	GOLD domain-containing protein.	0.541
C1H46_013113	C1H46_043101	A0A540MR86	A0A540KAV2	Uncharacterized protein.	PLAT domain-containing protein.	0.539
C1H46_013113	C1H46_044323	A0A540MR86	A0A540K7D9	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_013113	C1H46_045038	A0A540MR86	A0A540K5B7	Uncharacterized protein.	Uncharacterized protein.	0.540
C1H46_023867	C1H46_013110	A0A540LVN9	A0A540MR79	Uncharacterized protein.	Uncharacterized protein.	0.568
C1H46_023867	C1H46_013113	A0A540LVN9	A0A540MR86	Uncharacterized protein.	Uncharacterized protein.	0.620