(44 nodes) U1 snRNP, and Nuclear cap binding complex network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_045828	Uncharacterized protein. (182 aa)
	C1H46_044660	RRM domain-containing protein. (510 aa)
	C1H46_043242	Uncharacterized protein. (198 aa)
	C1H46_042552	Uncharacterized protein. (816 aa)
	C1H46_041762	DUF3700 domain-containing protein. (255 aa)
	C1H46_040286	Uncharacterized protein. (80 aa)
	C1H46_040403	Uncharacterized protein. (261 aa)
	C1H46_039880	Uncharacterized protein. (530 aa)
	C1H46_038369	PWI domain-containing protein. (208 aa)
	C1H46_038367	PWI domain-containing protein. (455 aa)
	C1H46_038099	RNA_GG_bind domain-containing protein. (339 aa)
	C1H46_037902	C2H2-type domain-containing protein. (749 aa)
	C1H46_033989	Uncharacterized protein. (320 aa)
	C1H46_033629	Uncharacterized protein. (83 aa)
	C1H46_033066	Uncharacterized protein. (1006 aa)
	C1H46_032308	U1snRNP70_N domain-containing protein. (118 aa)
	C1H46_030743	Uncharacterized protein. (1004 aa)
	C1H46_029553	Uncharacterized protein. (74 aa)
	C1H46_027334	RRM domain-containing protein. (317 aa)
	C1H46_026958	Uncharacterized protein. (832 aa)
	C1H46_025404	Uncharacterized protein. (98 aa)
	C1H46_025403	Nuclear cap-binding protein subunit 2. (176 aa)
	C1H46_020202	Uncharacterized protein. (414 aa)
	C1H46_017986	Uncharacterized protein. (1094 aa)
	C1H46_015771	Uncharacterized protein. (328 aa)
	C1H46_015361	Uncharacterized protein. (437 aa)
	C1H46_014279	C2H2-type domain-containing protein. (731 aa)
	C1H46_013955	PWI domain-containing protein. (829 aa)
	C1H46_013873	Uncharacterized protein. (138 aa)
	C1H46_013638	Uncharacterized protein. (1141 aa)
	C1H46_012765	MIF4G domain-containing protein. (865 aa)
	C1H46_012492	MIF4G domain-containing protein. (867 aa)
	C1H46_010559	Nuclear cap-binding protein subunit 2. (143 aa)
	C1H46_010558	Uncharacterized protein. (81 aa)
	C1H46_008909	Uncharacterized protein. (74 aa)
	C1H46_007644	Uncharacterized protein. (149 aa)
	C1H46_005403	Uncharacterized protein. (2170 aa)
	C1H46_004569	Uncharacterized protein. (687 aa)
	C1H46_003711	Uncharacterized protein. (1080 aa)
	C1H46_002138	Uncharacterized protein. (123 aa)
	C1H46_001706	Uncharacterized protein. (135 aa)
	C1H46_001725	Uncharacterized protein. (76 aa)
	C1H46_000973	Uncharacterized protein. (258 aa)
	C1H46_000308	Uncharacterized protein. (117 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_000308	C1H46_001706	A0A540NSK0	A0A540NNS0	Uncharacterized protein.	Uncharacterized protein.	0.710
C1H46_000308	C1H46_001725	A0A540NSK0	A0A540NNV8	Uncharacterized protein.	Uncharacterized protein.	0.710
C1H46_000308	C1H46_003711	A0A540NSK0	A0A540NID2	Uncharacterized protein.	Uncharacterized protein.	0.731
C1H46_000308	C1H46_005403	A0A540NSK0	A0A540NES4	Uncharacterized protein.	Uncharacterized protein.	0.780
C1H46_000308	C1H46_007644	A0A540NSK0	A0A540N6T9	Uncharacterized protein.	Uncharacterized protein.	0.710
C1H46_000308	C1H46_008909	A0A540NSK0	A0A540N394	Uncharacterized protein.	Uncharacterized protein.	0.715
C1H46_000308	C1H46_010558	A0A540NSK0	A0A540MYN8	Uncharacterized protein.	Uncharacterized protein.	0.683
C1H46_000308	C1H46_010559	A0A540NSK0	A0A540MYM4	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.683
C1H46_000308	C1H46_012492	A0A540NSK0	A0A540MSW3	Uncharacterized protein.	MIF4G domain-containing protein.	0.715
C1H46_000308	C1H46_012765	A0A540NSK0	A0A540MS52	Uncharacterized protein.	MIF4G domain-containing protein.	0.715
C1H46_000308	C1H46_013873	A0A540NSK0	A0A540MNY5	Uncharacterized protein.	Uncharacterized protein.	0.710
C1H46_000308	C1H46_015361	A0A540NSK0	A0A540MJP7	Uncharacterized protein.	Uncharacterized protein.	0.776
C1H46_000308	C1H46_015771	A0A540NSK0	A0A540MIF0	Uncharacterized protein.	Uncharacterized protein.	0.776
C1H46_000308	C1H46_017986	A0A540NSK0	A0A540MCM8	Uncharacterized protein.	Uncharacterized protein.	0.731
C1H46_000308	C1H46_020202	A0A540NSK0	A0A540M5Y2	Uncharacterized protein.	Uncharacterized protein.	0.776
C1H46_000308	C1H46_025403	A0A540NSK0	A0A540LRW9	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.683
C1H46_000308	C1H46_025404	A0A540NSK0	A0A540LR96	Uncharacterized protein.	Uncharacterized protein.	0.683
C1H46_000308	C1H46_027334	A0A540NSK0	A0A540LKW1	Uncharacterized protein.	RRM domain-containing protein.	0.710
C1H46_000308	C1H46_030743	A0A540NSK0	A0A540LB57	Uncharacterized protein.	Uncharacterized protein.	0.731
C1H46_000308	C1H46_032308	A0A540NSK0	A0A540L6N7	Uncharacterized protein.	U1snRNP70_N domain-containing protein.	0.710