(14 nodes) Mixed, incl. MCAfunc domain, and Dormancy/auxin associated protein network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_044840	Uncharacterized protein. (568 aa)
	C1H46_044325	Uncharacterized protein. (655 aa)
	C1H46_042754	Uncharacterized protein. (531 aa)
	C1H46_039011	Uncharacterized protein. (279 aa)
	C1H46_037699	Uncharacterized protein. (379 aa)
	C1H46_032709	HMA domain-containing protein. (180 aa)
	C1H46_031067	Uncharacterized protein. (121 aa)
	C1H46_028648	Uncharacterized protein. (313 aa)
	C1H46_025462	Uncharacterized protein. (477 aa)
	C1H46_020722	Uncharacterized protein. (400 aa)
	C1H46_020723	PMR5N domain-containing protein. (492 aa)
	C1H46_012301	Uncharacterized protein. (334 aa)
	C1H46_009305	Uncharacterized protein. (176 aa)
	C1H46_001083	RAP domain-containing protein. (698 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_001083	C1H46_012301	A0A540NQG2	A0A540MV12	RAP domain-containing protein.	Uncharacterized protein.	0.505
C1H46_001083	C1H46_020722	A0A540NQG2	A0A540M4U2	RAP domain-containing protein.	Uncharacterized protein.	0.450
C1H46_001083	C1H46_020723	A0A540NQG2	A0A540M5C3	RAP domain-containing protein.	PMR5N domain-containing protein.	0.445
C1H46_001083	C1H46_028648	A0A540NQG2	A0A540LHD4	RAP domain-containing protein.	Uncharacterized protein.	0.471
C1H46_001083	C1H46_031067	A0A540NQG2	A0A540LA53	RAP domain-containing protein.	Uncharacterized protein.	0.465
C1H46_001083	C1H46_037699	A0A540NQG2	A0A540KRB3	RAP domain-containing protein.	Uncharacterized protein.	0.477
C1H46_001083	C1H46_039011	A0A540NQG2	A0A540KN83	RAP domain-containing protein.	Uncharacterized protein.	0.524
C1H46_001083	C1H46_044325	A0A540NQG2	A0A540K8B0	RAP domain-containing protein.	Uncharacterized protein.	0.464
C1H46_009305	C1H46_012301	A0A540N3N1	A0A540MV12	Uncharacterized protein.	Uncharacterized protein.	0.496
C1H46_009305	C1H46_020722	A0A540N3N1	A0A540M4U2	Uncharacterized protein.	Uncharacterized protein.	0.484
C1H46_009305	C1H46_020723	A0A540N3N1	A0A540M5C3	Uncharacterized protein.	PMR5N domain-containing protein.	0.522
C1H46_009305	C1H46_025462	A0A540N3N1	A0A540LR73	Uncharacterized protein.	Uncharacterized protein.	0.446
C1H46_009305	C1H46_028648	A0A540N3N1	A0A540LHD4	Uncharacterized protein.	Uncharacterized protein.	0.481
C1H46_009305	C1H46_031067	A0A540N3N1	A0A540LA53	Uncharacterized protein.	Uncharacterized protein.	0.513
C1H46_009305	C1H46_032709	A0A540N3N1	A0A540L5P9	Uncharacterized protein.	HMA domain-containing protein.	0.534
C1H46_009305	C1H46_037699	A0A540N3N1	A0A540KRB3	Uncharacterized protein.	Uncharacterized protein.	0.504
C1H46_009305	C1H46_039011	A0A540N3N1	A0A540KN83	Uncharacterized protein.	Uncharacterized protein.	0.470
C1H46_009305	C1H46_042754	A0A540N3N1	A0A540KBX1	Uncharacterized protein.	Uncharacterized protein.	0.483
C1H46_009305	C1H46_044325	A0A540N3N1	A0A540K8B0	Uncharacterized protein.	Uncharacterized protein.	0.459
C1H46_009305	C1H46_044840	A0A540N3N1	A0A540K5Y7	Uncharacterized protein.	Uncharacterized protein.	0.465