(16 nodes) Cytosolic small ribosomal subunit network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_042807	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	C1H46_040610	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	C1H46_037300	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	C1H46_029652	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	C1H46_023791	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
	C1H46_022435	Ubiquitin-like domain-containing protein. (95 aa)
	C1H46_012197	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	C1H46_016830	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (79 aa)
	C1H46_015892	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (99 aa)
	C1H46_013024	Ubiquitin-like domain-containing protein. (156 aa)
	C1H46_008554	S10_plectin domain-containing protein. (179 aa)
	C1H46_009023	Uncharacterized protein. (63 aa)
	C1H46_007303	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (215 aa)
	C1H46_004686	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (299 aa)
	C1H46_003530	Uncharacterized protein. (148 aa)
	C1H46_002985	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (81 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002985	C1H46_003530	A0A540NK56	A0A540NJZ9	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.997
C1H46_002985	C1H46_004686	A0A540NK56	A0A540NFC3	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.997
C1H46_002985	C1H46_007303	A0A540NK56	A0A540N7X6	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
C1H46_002985	C1H46_008554	A0A540NK56	A0A540N495	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	S10_plectin domain-containing protein.	0.997
C1H46_002985	C1H46_009023	A0A540NK56	A0A540N498	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.998
C1H46_002985	C1H46_012197	A0A540NK56	A0A540M2K7	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.998
C1H46_002985	C1H46_013024	A0A540NK56	A0A540MRD6	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ubiquitin-like domain-containing protein.	0.998
C1H46_002985	C1H46_015892	A0A540NK56	A0A540MIR6	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.998
C1H46_002985	C1H46_016830	A0A540NK56	A0A540MFQ1	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
C1H46_002985	C1H46_022435	A0A540NK56	A0A540M052	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ubiquitin-like domain-containing protein.	0.997
C1H46_002985	C1H46_023791	A0A540NK56	A0A540LW03	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.997
C1H46_002985	C1H46_029652	A0A540NK56	A0A540LEB0	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.997
C1H46_002985	C1H46_037300	A0A540NK56	A0A540KSG2	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
C1H46_002985	C1H46_040610	A0A540NK56	A0A540KI59	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
C1H46_002985	C1H46_042807	A0A540NK56	A0A540KBR1	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.998
C1H46_003530	C1H46_002985	A0A540NJZ9	A0A540NK56	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.997
C1H46_003530	C1H46_004686	A0A540NJZ9	A0A540NFC3	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.996
C1H46_003530	C1H46_007303	A0A540NJZ9	A0A540N7X6	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.998
C1H46_003530	C1H46_008554	A0A540NJZ9	A0A540N495	Uncharacterized protein.	S10_plectin domain-containing protein.	0.996
C1H46_003530	C1H46_009023	A0A540NJZ9	A0A540N498	Uncharacterized protein.	Uncharacterized protein.	0.997