(46 nodes) Protein deneddylation, and Cullin, conserved site network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_044630	Uncharacterized protein. (280 aa)
	C1H46_043180	PCI domain-containing protein. (450 aa)
	C1H46_039990	MPN domain-containing protein. (367 aa)
	C1H46_038159	Uncharacterized protein. (125 aa)
	C1H46_038160	CULLIN_2 domain-containing protein; Belongs to the cullin family. (869 aa)
	C1H46_037698	CULLIN_2 domain-containing protein; Belongs to the cullin family. (286 aa)
	C1H46_035366	CSN8_PSD8_EIF3K domain-containing protein. (132 aa)
	C1H46_035365	CSN8_PSD8_EIF3K domain-containing protein. (76 aa)
	C1H46_034238	Ubiquitin-like domain-containing protein. (117 aa)
	C1H46_033647	MPN domain-containing protein. (331 aa)
	C1H46_031535	WD_REPEATS_REGION domain-containing protein. (416 aa)
	C1H46_030649	Uncharacterized protein. (1210 aa)
	C1H46_030678	MPN domain-containing protein. (367 aa)
	C1H46_030476	RING-type domain-containing protein. (140 aa)
	C1H46_030472	RING-type domain-containing protein. (117 aa)
	C1H46_030331	PCI domain-containing protein. (260 aa)
	C1H46_029864	CPSF_A domain-containing protein. (1068 aa)
	C1H46_029153	PCI domain-containing protein. (484 aa)
	C1H46_028557	Uncharacterized protein. (1577 aa)
	C1H46_028317	WD_REPEATS_REGION domain-containing protein. (517 aa)
	C1H46_027177	PCI domain-containing protein. (188 aa)
	C1H46_026343	CULLIN_2 domain-containing protein; Belongs to the cullin family. (831 aa)
	C1H46_025936	Ubiquitin-like domain-containing protein. (185 aa)
	C1H46_025756	CPSF_A domain-containing protein. (1089 aa)
	C1H46_024318	Uncharacterized protein. (121 aa)
	C1H46_023071	Uncharacterized protein. (85 aa)
	C1H46_020984	Uncharacterized protein. (768 aa)
	C1H46_020231	Uncharacterized protein. (144 aa)
	C1H46_019188	PCI domain-containing protein. (260 aa)
	C1H46_019028	DDA1 domain-containing protein. (68 aa)
	C1H46_018080	Uncharacterized protein. (492 aa)
	C1H46_017720	Uncharacterized protein. (264 aa)
	C1H46_016221	PCI domain-containing protein. (312 aa)
	C1H46_014841	PCI domain-containing protein. (324 aa)
	C1H46_014465	PCI domain-containing protein. (190 aa)
	C1H46_013972	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (98 aa)
	C1H46_013182	Uncharacterized protein. (129 aa)
	C1H46_013184	Uncharacterized protein. (64 aa)
	C1H46_013400	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (98 aa)
	C1H46_013183	Uncharacterized protein. (84 aa)
	C1H46_011386	Uncharacterized protein. (407 aa)
	C1H46_009806	MPN domain-containing protein. (331 aa)
	C1H46_008763	PCI domain-containing protein. (450 aa)
	C1H46_008147	Uncharacterized protein. (55 aa)
	C1H46_008148	PCI domain-containing protein. (260 aa)
	C1H46_007405	DDA1 domain-containing protein. (124 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_007405	C1H46_008147	A0A540N7H8	A0A540N573	DDA1 domain-containing protein.	Uncharacterized protein.	0.664
C1H46_007405	C1H46_008148	A0A540N7H8	A0A540N585	DDA1 domain-containing protein.	PCI domain-containing protein.	0.664
C1H46_007405	C1H46_008763	A0A540N7H8	A0A540N556	DDA1 domain-containing protein.	PCI domain-containing protein.	0.664
C1H46_007405	C1H46_009806	A0A540N7H8	A0A540N245	DDA1 domain-containing protein.	MPN domain-containing protein.	0.668
C1H46_007405	C1H46_011386	A0A540N7H8	A0A540MW59	DDA1 domain-containing protein.	Uncharacterized protein.	0.739
C1H46_007405	C1H46_013182	A0A540N7H8	A0A540MQT6	DDA1 domain-containing protein.	Uncharacterized protein.	0.643
C1H46_007405	C1H46_013183	A0A540N7H8	A0A540MS17	DDA1 domain-containing protein.	Uncharacterized protein.	0.643
C1H46_007405	C1H46_013184	A0A540N7H8	A0A540MQV6	DDA1 domain-containing protein.	Uncharacterized protein.	0.643
C1H46_007405	C1H46_014465	A0A540N7H8	A0A540MMH8	DDA1 domain-containing protein.	PCI domain-containing protein.	0.690
C1H46_007405	C1H46_014841	A0A540N7H8	A0A540ML33	DDA1 domain-containing protein.	PCI domain-containing protein.	0.728
C1H46_007405	C1H46_016221	A0A540N7H8	A0A540MI25	DDA1 domain-containing protein.	PCI domain-containing protein.	0.728
C1H46_007405	C1H46_017720	A0A540N7H8	A0A540MD70	DDA1 domain-containing protein.	Uncharacterized protein.	0.664
C1H46_007405	C1H46_018080	A0A540N7H8	A0A540MC46	DDA1 domain-containing protein.	Uncharacterized protein.	0.871
C1H46_007405	C1H46_019188	A0A540N7H8	A0A540M8Y8	DDA1 domain-containing protein.	PCI domain-containing protein.	0.643
C1H46_007405	C1H46_020231	A0A540N7H8	A0A540M605	DDA1 domain-containing protein.	Uncharacterized protein.	0.664
C1H46_007405	C1H46_020984	A0A540N7H8	A0A540M3U1	DDA1 domain-containing protein.	Uncharacterized protein.	0.768
C1H46_007405	C1H46_023071	A0A540N7H8	A0A540LXU7	DDA1 domain-containing protein.	Uncharacterized protein.	0.643
C1H46_007405	C1H46_024318	A0A540N7H8	A0A540LUI9	DDA1 domain-containing protein.	Uncharacterized protein.	0.691
C1H46_007405	C1H46_025756	A0A540N7H8	A0A540LR04	DDA1 domain-containing protein.	CPSF_A domain-containing protein.	0.986
C1H46_007405	C1H46_026343	A0A540N7H8	A0A540LNS0	DDA1 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.939