(18 nodes) U6 snRNA binding network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_045184	Uncharacterized protein. (175 aa)
	C1H46_002658	WD_REPEATS_REGION domain-containing protein. (542 aa)
	C1H46_005608	Uncharacterized protein. (183 aa)
	C1H46_008506	WD_REPEATS_REGION domain-containing protein. (375 aa)
	C1H46_008505	WD_REPEATS_REGION domain-containing protein. (410 aa)
	C1H46_015239	Uncharacterized protein. (928 aa)
	C1H46_017050	Uncharacterized protein. (498 aa)
	C1H46_017851	MPN domain-containing protein. (479 aa)
	C1H46_018381	Uncharacterized protein. (130 aa)
	C1H46_018384	RRM domain-containing protein. (809 aa)
	C1H46_024252	Uncharacterized protein. (337 aa)
	C1H46_024253	MPN domain-containing protein. (183 aa)
	C1H46_031187	Uncharacterized protein. (95 aa)
	C1H46_032808	Uncharacterized protein. (464 aa)
	C1H46_037401	Lsm_interact domain-containing protein. (669 aa)
	C1H46_039522	MPN domain-containing protein. (2347 aa)
	C1H46_040546	PROCT domain-containing protein. (75 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002658	C1H46_017851	A0A540NLB6	A0A540MCN5	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.895
C1H46_002658	C1H46_018381	A0A540NLB6	A0A540MC33	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.578
C1H46_002658	C1H46_018384	A0A540NLB6	A0A540MBV8	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.578
C1H46_002658	C1H46_024252	A0A540NLB6	A0A540LUR1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.895
C1H46_002658	C1H46_024253	A0A540NLB6	A0A540LUP5	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.895
C1H46_002658	C1H46_037401	A0A540NLB6	A0A540KS68	WD_REPEATS_REGION domain-containing protein.	Lsm_interact domain-containing protein.	0.578
C1H46_002658	C1H46_039522	A0A540NLB6	A0A540KL49	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.895
C1H46_002658	C1H46_040546	A0A540NLB6	A0A540KI74	WD_REPEATS_REGION domain-containing protein.	PROCT domain-containing protein.	0.895
C1H46_002658	C1H46_045184	A0A540NLB6	A0A540K4X5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.578
C1H46_002658	LSM4	A0A540NLB6	A0A540KE75	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.946
C1H46_005608	C1H46_017851	A0A540NE21	A0A540MCN5	Uncharacterized protein.	MPN domain-containing protein.	0.842
C1H46_005608	C1H46_024252	A0A540NE21	A0A540LUR1	Uncharacterized protein.	Uncharacterized protein.	0.842
C1H46_005608	C1H46_024253	A0A540NE21	A0A540LUP5	Uncharacterized protein.	MPN domain-containing protein.	0.842
C1H46_005608	C1H46_039522	A0A540NE21	A0A540KL49	Uncharacterized protein.	MPN domain-containing protein.	0.842
C1H46_005608	C1H46_040546	A0A540NE21	A0A540KI74	Uncharacterized protein.	PROCT domain-containing protein.	0.842
C1H46_005608	LSM4	A0A540NE21	A0A540KE75	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.674
C1H46_008505	C1H46_017851	A0A540N438	A0A540MCN5	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.895
C1H46_008505	C1H46_018381	A0A540N438	A0A540MC33	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.578
C1H46_008505	C1H46_018384	A0A540N438	A0A540MBV8	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.578
C1H46_008505	C1H46_024252	A0A540N438	A0A540LUR1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.895