(15 nodes) HOPS complex network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_039844	Uncharacterized protein. (141 aa)
	C1H46_031376	Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. (953 aa)
	C1H46_033778	Uncharacterized protein. (652 aa)
	C1H46_043524	CNH domain-containing protein. (960 aa)
	C1H46_035547	Pep3_Vps18 domain-containing protein. (1034 aa)
	C1H46_010373	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic. (1009 aa)
	C1H46_001112	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic. (967 aa)
	C1H46_000920	Uncharacterized protein. (1105 aa)
	C1H46_032107	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (535 aa)
	C1H46_019568	Uncharacterized protein. (472 aa)
	C1H46_017743	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (595 aa)
	C1H46_016937	Uncharacterized protein. (1971 aa)
	C1H46_031381	Uncharacterized protein. (485 aa)
	C1H46_023625	Uncharacterized protein. (893 aa)
	C1H46_022069	Pep3_Vps18 domain-containing protein. (989 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_000920	C1H46_001112	A0A540NRV6	A0A540NQK2	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	0.616
C1H46_000920	C1H46_010373	A0A540NRV6	A0A540MYZ4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	0.616
C1H46_000920	C1H46_017743	A0A540NRV6	A0A540MD50	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.949
C1H46_000920	C1H46_022069	A0A540NRV6	A0A540M0X3	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.949
C1H46_000920	C1H46_023625	A0A540NRV6	A0A540LWB1	Uncharacterized protein.	Uncharacterized protein.	0.913
C1H46_000920	C1H46_031376	A0A540NRV6	A0A540L9A2	Uncharacterized protein.	Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.	0.937
C1H46_000920	C1H46_031381	A0A540NRV6	A0A540L9A5	Uncharacterized protein.	Uncharacterized protein.	0.937
C1H46_000920	C1H46_032107	A0A540NRV6	A0A540L787	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.949
C1H46_000920	C1H46_033778	A0A540NRV6	A0A540L2X5	Uncharacterized protein.	Uncharacterized protein.	0.962
C1H46_000920	C1H46_035547	A0A540NRV6	A0A540KXS4	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.949
C1H46_000920	C1H46_039844	A0A540NRV6	A0A540KKS8	Uncharacterized protein.	Uncharacterized protein.	0.937
C1H46_000920	C1H46_043524	A0A540NRV6	A0A540K9P1	Uncharacterized protein.	CNH domain-containing protein.	0.913
C1H46_001112	C1H46_000920	A0A540NQK2	A0A540NRV6	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein.	0.616
C1H46_001112	C1H46_016937	A0A540NQK2	A0A540MFF4	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein.	0.616
C1H46_001112	C1H46_017743	A0A540NQK2	A0A540MD50	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.991
C1H46_001112	C1H46_019568	A0A540NQK2	A0A540M8E5	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein.	0.616
C1H46_001112	C1H46_022069	A0A540NQK2	A0A540M0X3	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Pep3_Vps18 domain-containing protein.	0.993
C1H46_001112	C1H46_023625	A0A540NQK2	A0A540LWB1	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein.	0.984
C1H46_001112	C1H46_031376	A0A540NQK2	A0A540L9A2	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.	0.992
C1H46_001112	C1H46_031381	A0A540NQK2	A0A540L9A5	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.	Uncharacterized protein.	0.988