(45 nodes) Regulation of mRNA splicing, via spliceosome network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_033066	Uncharacterized protein. (1006 aa)
	C1H46_039103	Uncharacterized protein. (671 aa)
	C1H46_038369	PWI domain-containing protein. (208 aa)
	C1H46_038367	PWI domain-containing protein. (455 aa)
	C1H46_002851	Uncharacterized protein. (356 aa)
	C1H46_004285	YTH domain-containing protein. (315 aa)
	C1H46_007005	KH domain-containing protein. (292 aa)
	C1H46_007324	Uncharacterized protein. (365 aa)
	C1H46_009778	KH domain-containing protein. (371 aa)
	C1H46_013115	RING-CH-type domain-containing protein. (613 aa)
	C1H46_013114	Uncharacterized protein. (371 aa)
	C1H46_013471	RRM domain-containing protein. (402 aa)
	C1H46_013955	PWI domain-containing protein. (829 aa)
	C1H46_014279	C2H2-type domain-containing protein. (731 aa)
	C1H46_014300	RRM domain-containing protein. (105 aa)
	C1H46_015376	Uncharacterized protein. (791 aa)
	C1H46_039287	Uncharacterized protein. (667 aa)
	C1H46_041979	DUF2040 domain-containing protein. (333 aa)
	C1H46_015788	Uncharacterized protein. (794 aa)
	C1H46_018345	KH domain-containing protein. (292 aa)
	C1H46_018673	KH domain-containing protein. (281 aa)
	C1H46_018918	KH domain-containing protein. (280 aa)
	C1H46_042552	Uncharacterized protein. (816 aa)
	C1H46_042700	KH domain-containing protein. (382 aa)
	C1H46_043056	Uncharacterized protein. (358 aa)
	C1H46_043988	Uncharacterized protein. (486 aa)
	C1H46_014301	Uncharacterized protein. (186 aa)
	C1H46_045399	U1-type domain-containing protein. (345 aa)
	C1H46_045828	Uncharacterized protein. (182 aa)
	C1H46_019862	RRM domain-containing protein. (438 aa)
	C1H46_020372	Uncharacterized protein. (215 aa)
	C1H46_020739	RRM domain-containing protein. (58 aa)
	C1H46_020740	CCHC-type domain-containing protein. (220 aa)
	C1H46_028226	RRM domain-containing protein. (180 aa)
	C1H46_029501	Uncharacterized protein. (347 aa)
	C1H46_029502	Uncharacterized protein. (269 aa)
	C1H46_029550	KH domain-containing protein. (281 aa)
	C1H46_031843	Uncharacterized protein. (476 aa)
	C1H46_039274	KH domain-containing protein. (280 aa)
	C1H46_032001	Uncharacterized protein. (641 aa)
	C1H46_032950	RRM domain-containing protein. (439 aa)
	C1H46_037902	C2H2-type domain-containing protein. (749 aa)
	C1H46_037076	RRM domain-containing protein. (94 aa)
	C1H46_036795	Uncharacterized protein. (335 aa)
	C1H46_034050	Uncharacterized protein. (157 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_004285	C1H46_013471	A0A540NGE7	A0A540MQ69	YTH domain-containing protein.	RRM domain-containing protein.	0.429
C1H46_004285	C1H46_036795	A0A540NGE7	A0A540KTW1	YTH domain-containing protein.	Uncharacterized protein.	0.547
C1H46_004285	C1H46_039103	A0A540NGE7	A0A540KMV6	YTH domain-containing protein.	Uncharacterized protein.	0.926
C1H46_004285	C1H46_039287	A0A540NGE7	A0A540KLY9	YTH domain-containing protein.	Uncharacterized protein.	0.926
C1H46_007005	C1H46_032001	A0A540N8H1	A0A540L7L4	KH domain-containing protein.	Uncharacterized protein.	0.431
C1H46_007005	C1H46_045399	A0A540N8H1	A0A540K4B4	KH domain-containing protein.	U1-type domain-containing protein.	0.431
C1H46_007324	C1H46_013114	A0A540N7N6	A0A540MR04	Uncharacterized protein.	Uncharacterized protein.	0.463
C1H46_007324	C1H46_013115	A0A540N7N6	A0A540MR10	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.463
C1H46_007324	C1H46_013955	A0A540N7N6	A0A540MNR8	Uncharacterized protein.	PWI domain-containing protein.	0.669
C1H46_007324	C1H46_015376	A0A540N7N6	A0A540MKT4	Uncharacterized protein.	Uncharacterized protein.	0.463
C1H46_007324	C1H46_015788	A0A540N7N6	A0A540MIC6	Uncharacterized protein.	Uncharacterized protein.	0.463
C1H46_007324	C1H46_020372	A0A540N7N6	A0A540M6A6	Uncharacterized protein.	Uncharacterized protein.	0.442
C1H46_007324	C1H46_028226	A0A540N7N6	A0A540LIP9	Uncharacterized protein.	RRM domain-containing protein.	0.437
C1H46_007324	C1H46_029501	A0A540N7N6	A0A540LET9	Uncharacterized protein.	Uncharacterized protein.	0.441
C1H46_007324	C1H46_029502	A0A540N7N6	A0A540LES7	Uncharacterized protein.	Uncharacterized protein.	0.441
C1H46_007324	C1H46_033066	A0A540N7N6	A0A540L4E6	Uncharacterized protein.	Uncharacterized protein.	0.691
C1H46_007324	C1H46_034050	A0A540N7N6	A0A540L1K1	Uncharacterized protein.	Uncharacterized protein.	0.463
C1H46_007324	C1H46_037076	A0A540N7N6	A0A540KT31	Uncharacterized protein.	RRM domain-containing protein.	0.414
C1H46_007324	C1H46_038367	A0A540N7N6	A0A540KPL9	Uncharacterized protein.	PWI domain-containing protein.	0.669
C1H46_007324	C1H46_038369	A0A540N7N6	A0A540KPG4	Uncharacterized protein.	PWI domain-containing protein.	0.669