(13 nodes) Respiratory chain complex IV network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_024257	Uncharacterized protein. (307 aa)
	C1H46_040640	Uncharacterized protein. (165 aa)
	C1H46_038623	Uncharacterized protein. (286 aa)
	C1H46_038622	F-box domain-containing protein. (473 aa)
	C1H46_038620	Uncharacterized protein. (358 aa)
	C1H46_038619	Uncharacterized protein. (264 aa)
	C1H46_038618	F-box domain-containing protein. (451 aa)
	C1H46_038599	Uncharacterized protein. (97 aa)
	C1H46_038621	F-box domain-containing protein. (460 aa)
	C1H46_031636	Uncharacterized protein. (159 aa)
	C1H46_031637	Uncharacterized protein. (170 aa)
	C1H46_000237	Uncharacterized protein. (135 aa)
	C1H46_030091	Uncharacterized protein. (170 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_000237	C1H46_024257	A0A540NTE3	A0A540LV74	Uncharacterized protein.	Uncharacterized protein.	0.987
C1H46_000237	C1H46_030091	A0A540NTE3	A0A540LCY7	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_000237	C1H46_031636	A0A540NTE3	A0A540L8H9	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_000237	C1H46_031637	A0A540NTE3	A0A540L8J2	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_000237	C1H46_038618	A0A540NTE3	A0A540KNW4	Uncharacterized protein.	F-box domain-containing protein.	0.987
C1H46_000237	C1H46_038619	A0A540NTE3	A0A540KNS2	Uncharacterized protein.	Uncharacterized protein.	0.990
C1H46_000237	C1H46_038620	A0A540NTE3	A0A540KNS0	Uncharacterized protein.	Uncharacterized protein.	0.987
C1H46_000237	C1H46_038621	A0A540NTE3	A0A540KPB9	Uncharacterized protein.	F-box domain-containing protein.	0.990
C1H46_000237	C1H46_038622	A0A540NTE3	A0A540KNQ8	Uncharacterized protein.	F-box domain-containing protein.	0.987
C1H46_000237	C1H46_038623	A0A540NTE3	A0A540KNP7	Uncharacterized protein.	Uncharacterized protein.	0.987
C1H46_000237	C1H46_040640	A0A540NTE3	A0A540KHW1	Uncharacterized protein.	Uncharacterized protein.	0.998
C1H46_024257	C1H46_000237	A0A540LV74	A0A540NTE3	Uncharacterized protein.	Uncharacterized protein.	0.987
C1H46_024257	C1H46_038599	A0A540LV74	A0A540KNY7	Uncharacterized protein.	Uncharacterized protein.	0.987
C1H46_030091	C1H46_000237	A0A540LCY7	A0A540NTE3	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_030091	C1H46_038599	A0A540LCY7	A0A540KNY7	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_030091	C1H46_040640	A0A540LCY7	A0A540KHW1	Uncharacterized protein.	Uncharacterized protein.	0.944
C1H46_031636	C1H46_000237	A0A540L8H9	A0A540NTE3	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_031636	C1H46_038599	A0A540L8H9	A0A540KNY7	Uncharacterized protein.	Uncharacterized protein.	0.997
C1H46_031636	C1H46_040640	A0A540L8H9	A0A540KHW1	Uncharacterized protein.	Uncharacterized protein.	0.944
C1H46_031637	C1H46_000237	A0A540L8J2	A0A540NTE3	Uncharacterized protein.	Uncharacterized protein.	0.997