(16 nodes) Zinc finger, ZZ-type superfamily network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_031009	Uncharacterized protein. (444 aa)
	C1H46_032473	Uncharacterized protein. (4989 aa)
	C1H46_014148	Uncharacterized protein. (4838 aa)
	C1H46_022183	Transcriptional adapter. (506 aa)
	C1H46_031177	Phorbol-ester/DAG-type domain-containing protein. (243 aa)
	C1H46_001878	Uncharacterized protein. (1748 aa)
	C1H46_007602	Uncharacterized protein. (1002 aa)
	C1H46_010834	Uncharacterized protein. (441 aa)
	C1H46_011891	Transcriptional adapter. (500 aa)
	C1H46_041708	Uncharacterized protein. (709 aa)
	C1H46_040102	Uncharacterized protein. (1376 aa)
	C1H46_039078	ZZ-type domain-containing protein. (770 aa)
	C1H46_039035	Uncharacterized protein. (1437 aa)
	C1H46_038951	Transcriptional adapter. (558 aa)
	C1H46_034471	Uncharacterized protein. (1752 aa)
	C1H46_033168	Uncharacterized protein. (869 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_001878	C1H46_007602	A0A540NN78	A0A540N8J4	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_001878	C1H46_033168	A0A540NN78	A0A540L481	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_007602	C1H46_001878	A0A540N8J4	A0A540NN78	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_007602	C1H46_034471	A0A540N8J4	A0A540L0F8	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_007602	C1H46_039035	A0A540N8J4	A0A540KMI1	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_007602	C1H46_040102	A0A540N8J4	A0A540KJM8	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_010834	C1H46_039078	A0A540MXM3	A0A540KME0	Uncharacterized protein.	ZZ-type domain-containing protein.	0.875
C1H46_010834	C1H46_041708	A0A540MXM3	A0A540KF28	Uncharacterized protein.	Uncharacterized protein.	0.875
C1H46_031009	C1H46_039078	A0A540LAF5	A0A540KME0	Uncharacterized protein.	ZZ-type domain-containing protein.	0.875
C1H46_031009	C1H46_041708	A0A540LAF5	A0A540KF28	Uncharacterized protein.	Uncharacterized protein.	0.875
C1H46_033168	C1H46_001878	A0A540L481	A0A540NN78	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_033168	C1H46_034471	A0A540L481	A0A540L0F8	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_033168	C1H46_039035	A0A540L481	A0A540KMI1	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_033168	C1H46_040102	A0A540L481	A0A540KJM8	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_034471	C1H46_007602	A0A540L0F8	A0A540N8J4	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_034471	C1H46_033168	A0A540L0F8	A0A540L481	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_039035	C1H46_007602	A0A540KMI1	A0A540N8J4	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_039035	C1H46_033168	A0A540KMI1	A0A540L481	Uncharacterized protein.	Uncharacterized protein.	0.489
C1H46_039078	C1H46_010834	A0A540KME0	A0A540MXM3	ZZ-type domain-containing protein.	Uncharacterized protein.	0.875
C1H46_039078	C1H46_031009	A0A540KME0	A0A540LAF5	ZZ-type domain-containing protein.	Uncharacterized protein.	0.875