(88 nodes) Translesion synthesis by POLK network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_031421	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (920 aa)
	C1H46_030607	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (646 aa)
	C1H46_030177	Uncharacterized protein. (356 aa)
	C1H46_029466	AAA domain-containing protein. (991 aa)
	C1H46_028614	NAC domain-containing protein. (360 aa)
	C1H46_028610	NAC domain-containing protein. (531 aa)
	C1H46_028615	NAC domain-containing protein. (479 aa)
	C1H46_028617	NAC domain-containing protein. (500 aa)
	C1H46_028613	NAC domain-containing protein. (503 aa)
	C1H46_028619	NAC domain-containing protein. (446 aa)
	C1H46_028577	NAC domain-containing protein. (494 aa)
	C1H46_028618	NAC domain-containing protein. (749 aa)
	C1H46_028611	NAC domain-containing protein. (500 aa)
	C1H46_026586	Uncharacterized protein. (96 aa)
	C1H46_025102	REPA_OB_2 domain-containing protein. (331 aa)
	C1H46_023584	AAA domain-containing protein. (403 aa)
	C1H46_023652	Uncharacterized protein. (794 aa)
	C1H46_020870	Replication factor C subunit 1. (958 aa)
	C1H46_020869	Uncharacterized protein. (200 aa)
	C1H46_020403	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	C1H46_019753	NAC domain-containing protein. (554 aa)
	C1H46_019746	AAA domain-containing protein. (944 aa)
	C1H46_018388	Uncharacterized protein. (908 aa)
	C1H46_016912	Uncharacterized protein. (126 aa)
	C1H46_016916	NAC domain-containing protein. (649 aa)
	C1H46_016915	NAC domain-containing protein. (921 aa)
	C1H46_016914	NAC domain-containing protein. (531 aa)
	C1H46_016853	NAC domain-containing protein. (506 aa)
	C1H46_016854	Uncharacterized protein. (208 aa)
	C1H46_016858	NAC domain-containing protein. (567 aa)
	C1H46_039388	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (869 aa)
	C1H46_016849	Uncharacterized protein. (208 aa)
	C1H46_016859	Uncharacterized protein. (225 aa)
	C1H46_016856	NAC domain-containing protein. (504 aa)
	C1H46_016154	Uncharacterized protein. (215 aa)
	C1H46_016152	Uncharacterized protein. (94 aa)
	C1H46_016049	Uncharacterized protein. (642 aa)
	C1H46_016153	UmuC domain-containing protein. (139 aa)
	C1H46_015490	NAC domain-containing protein. (378 aa)
	C1H46_014691	NAC domain-containing protein. (850 aa)
	C1H46_014359	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (604 aa)
	C1H46_014717	AAA domain-containing protein. (338 aa)
	C1H46_014342	Uncharacterized protein. (171 aa)
	C1H46_014348	NAC domain-containing protein. (179 aa)
	C1H46_014345	NAC domain-containing protein. (325 aa)
	C1H46_014343	Uncharacterized protein. (324 aa)
	C1H46_013466	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (206 aa)
	C1H46_013024	Ubiquitin-like domain-containing protein. (156 aa)
	C1H46_012802	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (635 aa)
	C1H46_041249	Uncharacterized protein. (187 aa)
	C1H46_042125	Uncharacterized protein. (182 aa)
	C1H46_043562	REPA_OB_2 domain-containing protein. (313 aa)
	C1H46_044734	Uncharacterized protein. (393 aa)
	C1H46_044769	DNA_pol3_gamma3 domain-containing protein. (1187 aa)
	C1H46_045539	Uncharacterized protein. (210 aa)
	C1H46_012758	REPA_OB_2 domain-containing protein. (222 aa)
	C1H46_011798	Uncharacterized protein. (128 aa)
	C1H46_011796	Uncharacterized protein. (1055 aa)
	C1H46_010046	Uncharacterized protein. (104 aa)
	C1H46_010047	AAA domain-containing protein. (246 aa)
	C1H46_009602	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (646 aa)
	C1H46_009052	Uncharacterized protein. (655 aa)
	C1H46_008440	REPA_OB_2 domain-containing protein. (326 aa)
	C1H46_008205	Ubiquitin-like domain-containing protein. (180 aa)
	C1H46_007605	Uncharacterized protein. (258 aa)
	C1H46_005327	Replication factor C subunit 1. (951 aa)
	C1H46_005423	Uncharacterized protein. (652 aa)
	C1H46_003647	REPA_OB_2 domain-containing protein. (519 aa)
	C1H46_003980	Uncharacterized protein. (664 aa)
	C1H46_003232	REPA_OB_2 domain-containing protein. (276 aa)
	C1H46_002694	AAA domain-containing protein. (401 aa)
	C1H46_002697	Uncharacterized protein. (215 aa)
	C1H46_002701	Uncharacterized protein. (276 aa)
	C1H46_002660	Rep_fac-A_C domain-containing protein. (519 aa)
	C1H46_002308	BRCT domain-containing protein. (182 aa)
	C1H46_002307	UmuC domain-containing protein. (589 aa)
	C1H46_001847	Uncharacterized protein. (415 aa)
	C1H46_001459	NAC domain-containing protein. (859 aa)
	C1H46_036591	REPA_OB_2 domain-containing protein. (149 aa)
	C1H46_038722	AAA domain-containing protein. (365 aa)
	C1H46_038595	Uncharacterized protein. (212 aa)
	C1H46_035092	NAC domain-containing protein. (271 aa)
	C1H46_034658	Uncharacterized protein. (1436 aa)
	C1H46_034202	AAA domain-containing protein. (1193 aa)
	C1H46_033885	Uncharacterized protein. (222 aa)
	C1H46_032784	Uncharacterized protein. (761 aa)
	C1H46_031879	BRCT domain-containing protein. (400 aa)
	C1H46_031722	AAA domain-containing protein. (971 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_001459	C1H46_001847	A0A540NQC3	A0A540NNN6	NAC domain-containing protein.	Uncharacterized protein.	0.648
C1H46_001459	C1H46_002308	A0A540NQC3	A0A540NM51	NAC domain-containing protein.	BRCT domain-containing protein.	0.500
C1H46_001459	C1H46_002694	A0A540NQC3	A0A540NKV9	NAC domain-containing protein.	AAA domain-containing protein.	0.421
C1H46_001459	C1H46_002697	A0A540NQC3	A0A540NKW1	NAC domain-containing protein.	Uncharacterized protein.	0.421
C1H46_001459	C1H46_002701	A0A540NQC3	A0A540NKX7	NAC domain-containing protein.	Uncharacterized protein.	0.421
C1H46_001459	C1H46_003980	A0A540NQC3	A0A540NIF8	NAC domain-containing protein.	Uncharacterized protein.	0.421
C1H46_001459	C1H46_005327	A0A540NQC3	A0A540ND22	NAC domain-containing protein.	Replication factor C subunit 1.	0.500
C1H46_001459	C1H46_005423	A0A540NQC3	A0A540NEU3	NAC domain-containing protein.	Uncharacterized protein.	0.421
C1H46_001459	C1H46_007605	A0A540NQC3	A0A540N6R5	NAC domain-containing protein.	Uncharacterized protein.	0.678
C1H46_001459	C1H46_008205	A0A540NQC3	A0A540N6M3	NAC domain-containing protein.	Ubiquitin-like domain-containing protein.	0.412
C1H46_001459	C1H46_010046	A0A540NQC3	A0A540MZM1	NAC domain-containing protein.	Uncharacterized protein.	0.421
C1H46_001459	C1H46_010047	A0A540NQC3	A0A540MZP8	NAC domain-containing protein.	AAA domain-containing protein.	0.421
C1H46_001459	C1H46_011796	A0A540NQC3	A0A540MUX3	NAC domain-containing protein.	Uncharacterized protein.	0.469
C1H46_001459	C1H46_011798	A0A540NQC3	A0A540MUU5	NAC domain-containing protein.	Uncharacterized protein.	0.469
C1H46_001459	C1H46_013024	A0A540NQC3	A0A540MRD6	NAC domain-containing protein.	Ubiquitin-like domain-containing protein.	0.412
C1H46_001459	C1H46_013466	A0A540NQC3	A0A540MQ59	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.678
C1H46_001459	C1H46_014717	A0A540NQC3	A0A540MMQ0	NAC domain-containing protein.	AAA domain-containing protein.	0.429
C1H46_001459	C1H46_018388	A0A540NQC3	A0A540MBE7	NAC domain-containing protein.	Uncharacterized protein.	0.429
C1H46_001459	C1H46_019746	A0A540NQC3	A0A540M7G4	NAC domain-containing protein.	AAA domain-containing protein.	0.429
C1H46_001459	C1H46_020403	A0A540NQC3	A0A540M5J8	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.678