(77 nodes) Two-component system network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_009284	PDZ domain-containing protein. (388 aa)
	C1H46_044247	Uncharacterized protein. (660 aa)
	C1H46_044463	Uncharacterized protein. (530 aa)
	C1H46_043688	Uncharacterized protein. (332 aa)
	C1H46_042089	PDZ domain-containing protein. (449 aa)
	C1H46_041620	Protein-serine/threonine kinase. (350 aa)
	C1H46_039879	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
	C1H46_039537	Uncharacterized protein. (694 aa)
	C1H46_038955	Uncharacterized protein. (98 aa)
	C1H46_037685	Uncharacterized protein. (278 aa)
	C1H46_037590	Uncharacterized protein. (603 aa)
	C1H46_037058	Uncharacterized protein. (279 aa)
	C1H46_035770	Uncharacterized protein. (316 aa)
	C1H46_035627	Uncharacterized protein. (114 aa)
	C1H46_033034	Uncharacterized protein. (107 aa)
	C1H46_033035	Uncharacterized protein. (421 aa)
	C1H46_032876	G domain-containing protein. (347 aa)
	C1H46_032880	Uncharacterized protein. (566 aa)
	C1H46_032665	Uncharacterized protein. (312 aa)
	C1H46_032701	PDZ_3 domain-containing protein. (580 aa)
	C1H46_032700	PDZ_3 domain-containing protein. (554 aa)
	C1H46_032666	PDZ_3 domain-containing protein. (139 aa)
	C1H46_031969	Uncharacterized protein. (167 aa)
	C1H46_031967	Uncharacterized protein. (168 aa)
	C1H46_030922	Protein-serine/threonine kinase. (347 aa)
	C1H46_030683	GST C-terminal domain-containing protein. (112 aa)
	C1H46_030250	Uncharacterized protein. (901 aa)
	C1H46_028443	Uncharacterized protein. (510 aa)
	C1H46_023594	YrdC-like domain-containing protein. (295 aa)
	C1H46_025011	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (559 aa)
	C1H46_026222	Uncharacterized protein. (741 aa)
	C1H46_026984	S1 motif domain-containing protein. (614 aa)
	C1H46_026983	YqgFc domain-containing protein. (935 aa)
	C1H46_027445	Uncharacterized protein. (282 aa)
	C1H46_027492	PDZ domain-containing protein. (132 aa)
	C1H46_027735	Uncharacterized protein. (147 aa)
	C1H46_027756	Uncharacterized protein. (328 aa)
	C1H46_027759	Uncharacterized protein. (152 aa)
	C1H46_027750	Uncharacterized protein. (194 aa)
	C1H46_027736	Uncharacterized protein. (308 aa)
	C1H46_027741	Uncharacterized protein. (205 aa)
	C1H46_027739	Uncharacterized protein. (173 aa)
	C1H46_022235	G domain-containing protein. (231 aa)
	C1H46_022233	Uncharacterized protein. (381 aa)
	C1H46_023257	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1658 aa)
	C1H46_044990	PDZ domain-containing protein. (447 aa)
	C1H46_021786	Uncharacterized protein. (128 aa)
	C1H46_022234	Uncharacterized protein. (140 aa)
	C1H46_021924	Uncharacterized protein. (158 aa)
	C1H46_020860	Uncharacterized protein. (377 aa)
	C1H46_020628	PDZ domain-containing protein. (383 aa)
	C1H46_019407	PDZ_3 domain-containing protein. (551 aa)
	C1H46_018785	Uncharacterized protein. (241 aa)
	C1H46_018362	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (522 aa)
	C1H46_018416	Response regulatory domain-containing protein. (131 aa)
	C1H46_017600	Uncharacterized protein. (586 aa)
	C1H46_016022	GST N-terminal domain-containing protein. (300 aa)
	C1H46_016023	GST C-terminal domain-containing protein. (322 aa)
	C1H46_015149	Uncharacterized protein. (64 aa)
	C1H46_013768	YrdC-like domain-containing protein. (315 aa)
	C1H46_013640	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1128 aa)
	C1H46_013018	Uncharacterized protein; Belongs to the P(II) protein family. (209 aa)
	C1H46_012952	Uncharacterized protein. (677 aa)
	C1H46_011868	Uncharacterized protein. (360 aa)
	C1H46_009221	Uncharacterized protein. (1163 aa)
	C1H46_008360	Uncharacterized protein. (206 aa)
	C1H46_006980	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (505 aa)
	C1H46_006831	Uncharacterized protein. (224 aa)
	C1H46_004828	Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation. (719 aa)
	C1H46_004750	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (632 aa)
	C1H46_004573	GST C-terminal domain-containing protein; Belongs to the GST superfamily. (375 aa)
	C1H46_004610	Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation. (743 aa)
	C1H46_004261	Histidine kinase domain-containing protein. (379 aa)
	C1H46_003368	PDZ_3 domain-containing protein. (529 aa)
	C1H46_002680	G domain-containing protein. (350 aa)
	C1H46_002996	Uncharacterized protein. (69 aa)
	C1H46_002888	Uncharacterized protein; Belongs to the P(II) protein family. (231 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002680	C1H46_013768	A0A540NKS4	A0A540MPC0	G domain-containing protein.	YrdC-like domain-containing protein.	0.412
C1H46_002680	C1H46_023594	A0A540NKS4	A0A540LWF7	G domain-containing protein.	YrdC-like domain-containing protein.	0.412
C1H46_002888	C1H46_027445	A0A540NLI3	A0A540LKJ4	Uncharacterized protein; Belongs to the P(II) protein family.	Uncharacterized protein.	0.422
C1H46_002888	C1H46_035770	A0A540NLI3	A0A540KWP9	Uncharacterized protein; Belongs to the P(II) protein family.	Uncharacterized protein.	0.422
C1H46_003368	C1H46_026222	A0A540NJZ5	A0A540LNU4	PDZ_3 domain-containing protein.	Uncharacterized protein.	0.485
C1H46_003368	C1H46_027492	A0A540NJZ5	A0A540LKI1	PDZ_3 domain-containing protein.	PDZ domain-containing protein.	0.504
C1H46_003368	C1H46_032666	A0A540NJZ5	A0A540L650	PDZ_3 domain-containing protein.	PDZ_3 domain-containing protein.	0.422
C1H46_004750	C1H46_013768	A0A540NF34	A0A540MPC0	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	YrdC-like domain-containing protein.	0.412
C1H46_004750	C1H46_023594	A0A540NF34	A0A540LWF7	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	YrdC-like domain-containing protein.	0.412
C1H46_006831	C1H46_026222	A0A540N8Y2	A0A540LNU4	Uncharacterized protein.	Uncharacterized protein.	0.485
C1H46_006831	C1H46_027492	A0A540N8Y2	A0A540LKI1	Uncharacterized protein.	PDZ domain-containing protein.	0.485
C1H46_008360	C1H46_013768	A0A540N6C8	A0A540MPC0	Uncharacterized protein.	YrdC-like domain-containing protein.	0.412
C1H46_008360	C1H46_023594	A0A540N6C8	A0A540LWF7	Uncharacterized protein.	YrdC-like domain-containing protein.	0.412
C1H46_009284	C1H46_026222	A0A540N262	A0A540LNU4	PDZ domain-containing protein.	Uncharacterized protein.	0.485
C1H46_009284	C1H46_027492	A0A540N262	A0A540LKI1	PDZ domain-containing protein.	PDZ domain-containing protein.	0.485
C1H46_011868	C1H46_027735	A0A540MVT1	A0A540LK76	Uncharacterized protein.	Uncharacterized protein.	0.542
C1H46_011868	C1H46_027739	A0A540MVT1	A0A540LJR2	Uncharacterized protein.	Uncharacterized protein.	0.412
C1H46_011868	C1H46_027750	A0A540MVT1	A0A540LJS8	Uncharacterized protein.	Uncharacterized protein.	0.542
C1H46_011868	C1H46_027759	A0A540MVT1	A0A540LJT6	Uncharacterized protein.	Uncharacterized protein.	0.541
C1H46_013018	C1H46_027445	A0A540MRE0	A0A540LKJ4	Uncharacterized protein; Belongs to the P(II) protein family.	Uncharacterized protein.	0.422