10 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (107 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (163 aa)
	LOC101470307	Cyclin E2; Belongs to the cyclin family. (391 aa)
	cdkn1b	Cyclin-dependent kinase inhibitor 1Bb. (184 aa)
	skp2	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase. (397 aa)
	LOC101476359	Cyclin-dependent kinase inhibitor 1Cb. (208 aa)
	LOC101466273	Uncharacterized protein. (178 aa)
	cul1	Cullin 1b; Belongs to the cullin family. (776 aa)
	cdk2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
	ccna1	Cyclin A1; Belongs to the cyclin family. (398 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101466273	LOC101470307	ENSMZEP00005016186	ENSMZEP00005011789	Uncharacterized protein.	Cyclin E2; Belongs to the cyclin family.	0.979
LOC101466273	ccna1	ENSMZEP00005016186	ENSMZEP00005032889	Uncharacterized protein.	Cyclin A1; Belongs to the cyclin family.	0.975
LOC101466273	cdk2	ENSMZEP00005016186	ENSMZEP00005030012	Uncharacterized protein.	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	0.960
LOC101466273	cdkn1b	ENSMZEP00005016186	ENSMZEP00005013507	Uncharacterized protein.	Cyclin-dependent kinase inhibitor 1Bb.	0.907
LOC101466273	cul1	ENSMZEP00005016186	ENSMZEP00005017682	Uncharacterized protein.	Cullin 1b; Belongs to the cullin family.	0.978
LOC101466273	rbx1	ENSMZEP00005016186	ENSMZEP00005004432	Uncharacterized protein.	Ring-box 1, E3 ubiquitin protein ligase.	0.945
LOC101466273	skp1	ENSMZEP00005016186	ENSMZEP00005011787	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.978
LOC101466273	skp2	ENSMZEP00005016186	ENSMZEP00005014814	Uncharacterized protein.	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.	0.986
LOC101470307	LOC101466273	ENSMZEP00005011789	ENSMZEP00005016186	Cyclin E2; Belongs to the cyclin family.	Uncharacterized protein.	0.979
LOC101470307	LOC101476359	ENSMZEP00005011789	ENSMZEP00005014839	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase inhibitor 1Cb.	0.979
LOC101470307	ccna1	ENSMZEP00005011789	ENSMZEP00005032889	Cyclin E2; Belongs to the cyclin family.	Cyclin A1; Belongs to the cyclin family.	0.766
LOC101470307	cdk2	ENSMZEP00005011789	ENSMZEP00005030012	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	0.978
LOC101470307	cdkn1b	ENSMZEP00005011789	ENSMZEP00005013507	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase inhibitor 1Bb.	0.979
LOC101470307	cul1	ENSMZEP00005011789	ENSMZEP00005017682	Cyclin E2; Belongs to the cyclin family.	Cullin 1b; Belongs to the cullin family.	0.977
LOC101470307	rbx1	ENSMZEP00005011789	ENSMZEP00005004432	Cyclin E2; Belongs to the cyclin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.920
LOC101470307	skp1	ENSMZEP00005011789	ENSMZEP00005011787	Cyclin E2; Belongs to the cyclin family.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.981
LOC101470307	skp2	ENSMZEP00005011789	ENSMZEP00005014814	Cyclin E2; Belongs to the cyclin family.	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.	0.978
LOC101476359	LOC101470307	ENSMZEP00005014839	ENSMZEP00005011789	Cyclin-dependent kinase inhibitor 1Cb.	Cyclin E2; Belongs to the cyclin family.	0.979
LOC101476359	ccna1	ENSMZEP00005014839	ENSMZEP00005032889	Cyclin-dependent kinase inhibitor 1Cb.	Cyclin A1; Belongs to the cyclin family.	0.978
LOC101476359	cdk2	ENSMZEP00005014839	ENSMZEP00005030012	Cyclin-dependent kinase inhibitor 1Cb.	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	0.964