60 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbsn	Rabenosyn, RAB effector. (783 aa)
	LOC101470992	Ras and Rab interactor 1a. (512 aa)
	ENSMZEP00005001708	Uncharacterized protein. (382 aa)
	LOC101478210	Uncharacterized protein. (215 aa)
	LOC101467941	Si:ch211-266g18.9. (827 aa)
	RAB9A	RAB9A, member RAS oncogene family. (202 aa)
	tgfbrap1	Transforming growth factor, beta receptor associated protein 1. (872 aa)
	vps16	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (834 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	LOC101476881	RAB5A, member RAS oncogene family, a. (216 aa)
	LOC101484912	Uncharacterized protein. (661 aa)
	LOC101467589	Zgc:77486. (218 aa)
	vamp7	Synaptobrevin-like 1; Belongs to the synaptobrevin family. (220 aa)
	zhx2	Zinc fingers and homeoboxes 2a. (901 aa)
	ccz1	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated. (480 aa)
	rabep2	Rabaptin, RAB GTPase binding effector protein 2. (461 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1473 aa)
	LOC101465501	Uncharacterized protein. (238 aa)
	rab24	RAB24, member RAS oncogene family. (204 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (504 aa)
	LOC101470260	RUN and FYVE domain containing 1. (718 aa)
	ENSMZEP00005013795	RAB9B, member RAS oncogene family. (222 aa)
	mon1a	MON1 secretory trafficking family member A. (519 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (618 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (844 aa)
	vps39	VPS39 subunit of HOPS complex. (876 aa)
	LOC101473430	Uncharacterized protein. (1467 aa)
	vps18	VPS18 core subunit of CORVET and HOPS complexes. (982 aa)
	RAB17	Uncharacterized protein. (227 aa)
	ENSMZEP00005018681	Uncharacterized protein. (171 aa)
	LOC101476796	MON1 secretory trafficking family member Bb. (613 aa)
	vipas39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog. (491 aa)
	vps33b	VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family. (616 aa)
	LOC101481330	RAB5A, member RAS oncogene family, b. (216 aa)
	dennd6a	DENN/MADD domain containing 6Aa. (605 aa)
	LOC101472885	RAB guanine nucleotide exchange factor (GEF) 1, like. (504 aa)
	vps45	Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (625 aa)
	eea1	Early endosome antigen 1. (1395 aa)
	vps41	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (854 aa)
	vps8	VPS8 subunit of CORVET complex. (1400 aa)
	rab14	Uncharacterized protein. (215 aa)
	LOC101463742	Ras and Rab interactor 2. (1099 aa)
	rab21	RAB21, member RAS oncogene family. (216 aa)
	LOC101465912	Uncharacterized protein. (222 aa)
	ENSMZEP00005028341	Uncharacterized protein. (219 aa)
	LOC101475520	RAB5B, member RAS oncogene family. (216 aa)
	plekhm2	Pleckstrin homology domain containing, family M (with RUN domain) member 2. (1019 aa)
	usp6nl	USP6 N-terminal like. (731 aa)
	Usp6nl	Uncharacterized protein. (94 aa)
	rab20	RAB20, member RAS oncogene family. (260 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	armc5	Armadillo repeat containing 5. (814 aa)
	ENSMZEP00005031203	BTB domain-containing protein. (166 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (957 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (937 aa)
	ankrd27	Ankyrin repeat domain 27 (VPS9 domain). (1135 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	gripap1	GRIP1 associated protein 1. (879 aa)
	LOC101470116	Uncharacterized protein. (1038 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005001708	ENSMZEP00005013795	ENSMZEP00005001708	ENSMZEP00005013795	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.403
ENSMZEP00005001708	ENSMZEP00005028341	ENSMZEP00005001708	ENSMZEP00005028341	Uncharacterized protein.	Uncharacterized protein.	0.403
ENSMZEP00005001708	ENSMZEP00005031203	ENSMZEP00005001708	ENSMZEP00005031203	Uncharacterized protein.	BTB domain-containing protein.	0.498
ENSMZEP00005001708	LOC101463742	ENSMZEP00005001708	ENSMZEP00005025138	Uncharacterized protein.	Ras and Rab interactor 2.	0.659
ENSMZEP00005001708	LOC101465912	ENSMZEP00005001708	ENSMZEP00005028287	Uncharacterized protein.	Uncharacterized protein.	0.959
ENSMZEP00005001708	LOC101470116	ENSMZEP00005001708	ENSMZEP00005036255	Uncharacterized protein.	Uncharacterized protein.	0.959
ENSMZEP00005001708	LOC101470992	ENSMZEP00005001708	ENSMZEP00005001433	Uncharacterized protein.	Ras and Rab interactor 1a.	0.659
ENSMZEP00005001708	LOC101472885	ENSMZEP00005001708	ENSMZEP00005022466	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.607
ENSMZEP00005001708	LOC101473430	ENSMZEP00005001708	ENSMZEP00005015902	Uncharacterized protein.	Uncharacterized protein.	0.970
ENSMZEP00005001708	LOC101475520	ENSMZEP00005001708	ENSMZEP00005028615	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.959
ENSMZEP00005001708	LOC101476796	ENSMZEP00005001708	ENSMZEP00005019521	Uncharacterized protein.	MON1 secretory trafficking family member Bb.	0.579
ENSMZEP00005001708	LOC101476881	ENSMZEP00005001708	ENSMZEP00005006743	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.959
ENSMZEP00005001708	LOC101481330	ENSMZEP00005001708	ENSMZEP00005021709	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.959
ENSMZEP00005001708	LOC101484912	ENSMZEP00005001708	ENSMZEP00005007510	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSMZEP00005001708	RAB17	ENSMZEP00005001708	ENSMZEP00005018210	Uncharacterized protein.	Uncharacterized protein.	0.959
ENSMZEP00005001708	RAB31	ENSMZEP00005001708	ENSMZEP00005032648	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.959
ENSMZEP00005001708	RAB9A	ENSMZEP00005001708	ENSMZEP00005003234	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.403
ENSMZEP00005001708	Usp6nl	ENSMZEP00005001708	ENSMZEP00005029045	Uncharacterized protein.	Uncharacterized protein.	0.646
ENSMZEP00005001708	ankfy1	ENSMZEP00005001708	ENSMZEP00005031205	Uncharacterized protein.	Ankyrin repeat and FYVE domain containing 1.	0.498
ENSMZEP00005001708	armc5	ENSMZEP00005001708	ENSMZEP00005031089	Uncharacterized protein.	Armadillo repeat containing 5.	0.403