12 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSMZEP00005001708	Uncharacterized protein. (382 aa)
	LOC101484912	Uncharacterized protein. (661 aa)
	rabep2	Rabaptin, RAB GTPase binding effector protein 2. (461 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1473 aa)
	rab24	RAB24, member RAS oncogene family. (204 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (504 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (844 aa)
	LOC101473430	Uncharacterized protein. (1467 aa)
	LOC101481330	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC101472885	RAB guanine nucleotide exchange factor (GEF) 1, like. (504 aa)
	rab21	RAB21, member RAS oncogene family. (216 aa)
	LOC101475520	RAB5B, member RAS oncogene family. (216 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005001708	LOC101472885	ENSMZEP00005001708	ENSMZEP00005022466	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.607
ENSMZEP00005001708	LOC101473430	ENSMZEP00005001708	ENSMZEP00005015902	Uncharacterized protein.	Uncharacterized protein.	0.970
ENSMZEP00005001708	LOC101475520	ENSMZEP00005001708	ENSMZEP00005028615	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.959
ENSMZEP00005001708	LOC101481330	ENSMZEP00005001708	ENSMZEP00005021709	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.959
ENSMZEP00005001708	LOC101484912	ENSMZEP00005001708	ENSMZEP00005007510	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSMZEP00005001708	rab21	ENSMZEP00005001708	ENSMZEP00005028094	Uncharacterized protein.	RAB21, member RAS oncogene family.	0.963
ENSMZEP00005001708	rab24	ENSMZEP00005001708	ENSMZEP00005012810	Uncharacterized protein.	RAB24, member RAS oncogene family.	0.959
ENSMZEP00005001708	rabep1	ENSMZEP00005001708	ENSMZEP00005015023	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
ENSMZEP00005001708	rabep2	ENSMZEP00005001708	ENSMZEP00005011896	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.999
ENSMZEP00005001708	rabgef1	ENSMZEP00005001708	ENSMZEP00005013006	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.605
LOC101472885	ENSMZEP00005001708	ENSMZEP00005022466	ENSMZEP00005001708	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.607
LOC101472885	LOC101473430	ENSMZEP00005022466	ENSMZEP00005015902	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.970
LOC101472885	LOC101475520	ENSMZEP00005022466	ENSMZEP00005028615	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB5B, member RAS oncogene family.	0.959
LOC101472885	LOC101481330	ENSMZEP00005022466	ENSMZEP00005021709	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB5A, member RAS oncogene family, b.	0.959
LOC101472885	LOC101484912	ENSMZEP00005022466	ENSMZEP00005007510	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.969
LOC101472885	gapvd1	ENSMZEP00005022466	ENSMZEP00005012461	RAB guanine nucleotide exchange factor (GEF) 1, like.	GTPase activating protein and VPS9 domains 1.	0.622
LOC101472885	rab21	ENSMZEP00005022466	ENSMZEP00005028094	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB21, member RAS oncogene family.	0.964
LOC101472885	rab24	ENSMZEP00005022466	ENSMZEP00005012810	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB24, member RAS oncogene family.	0.959
LOC101472885	rabep1	ENSMZEP00005022466	ENSMZEP00005015023	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
LOC101472885	rabep2	ENSMZEP00005022466	ENSMZEP00005011896	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 2.	0.999