20 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ppard	Peroxisome proliferator-activated receptor delta b. (509 aa)
	LOC101483328	Nuclear receptor coactivator. (1464 aa)
	LOC101470618	Uncharacterized protein. (453 aa)
	PPARA	Peroxisome proliferator-activated receptor alpha b. (469 aa)
	ppara	Peroxisome proliferator-activated receptor alpha a. (475 aa)
	LOC101470553	Retinoid x receptor, beta b. (444 aa)
	PPARG	Peroxisome proliferator activated receptor gamma. (555 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (464 aa)
	rxra	Retinoid X receptor, alpha a. (496 aa)
	LOC101479683	Nuclear receptor subfamily 1, group D, member 2a. (597 aa)
	nr1d2	Nuclear receptor subfamily 1, group D, member 2b. (590 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (485 aa)
	ncoa2	Nuclear receptor coactivator. (1461 aa)
	ncoa1	Nuclear receptor coactivator 1. (1345 aa)
	LOC101474679	Uncharacterized protein. (420 aa)
	RXRB	Uncharacterized protein. (470 aa)
	NCOA3	Nuclear receptor coactivator 3. (1519 aa)
	LOC101467549	Vitamin D receptor b. (425 aa)
	LOC101468893	Nuclear receptor subfamily 1, group D, member 4a. (581 aa)
	LOC101474965	Nuclear receptor subfamily 1, group H, member 5. (494 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101467549	LOC101468893	ENSMZEP00005036153	ENSMZEP00005036428	Vitamin D receptor b.	Nuclear receptor subfamily 1, group D, member 4a.	0.744
LOC101467549	LOC101470553	ENSMZEP00005036153	ENSMZEP00005017987	Vitamin D receptor b.	Retinoid x receptor, beta b.	0.744
LOC101467549	LOC101470618	ENSMZEP00005036153	ENSMZEP00005009968	Vitamin D receptor b.	Uncharacterized protein.	0.744
LOC101467549	LOC101479683	ENSMZEP00005036153	ENSMZEP00005021768	Vitamin D receptor b.	Nuclear receptor subfamily 1, group D, member 2a.	0.744
LOC101467549	LOC101483328	ENSMZEP00005036153	ENSMZEP00005005700	Vitamin D receptor b.	Nuclear receptor coactivator.	0.759
LOC101467549	NCOA3	ENSMZEP00005036153	ENSMZEP00005034817	Vitamin D receptor b.	Nuclear receptor coactivator 3.	0.759
LOC101467549	RXRB	ENSMZEP00005036153	ENSMZEP00005032152	Vitamin D receptor b.	Uncharacterized protein.	0.744
LOC101467549	ncoa1	ENSMZEP00005036153	ENSMZEP00005029246	Vitamin D receptor b.	Nuclear receptor coactivator 1.	0.769
LOC101467549	ncoa2	ENSMZEP00005036153	ENSMZEP00005028938	Vitamin D receptor b.	Nuclear receptor coactivator.	0.759
LOC101467549	nr1d2	ENSMZEP00005036153	ENSMZEP00005022763	Vitamin D receptor b.	Nuclear receptor subfamily 1, group D, member 2b.	0.744
LOC101467549	rxra	ENSMZEP00005036153	ENSMZEP00005021220	Vitamin D receptor b.	Retinoid X receptor, alpha a.	0.744
LOC101468893	LOC101467549	ENSMZEP00005036428	ENSMZEP00005036153	Nuclear receptor subfamily 1, group D, member 4a.	Vitamin D receptor b.	0.744
LOC101468893	LOC101470553	ENSMZEP00005036428	ENSMZEP00005017987	Nuclear receptor subfamily 1, group D, member 4a.	Retinoid x receptor, beta b.	0.429
LOC101468893	LOC101470618	ENSMZEP00005036428	ENSMZEP00005009968	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.429
LOC101468893	LOC101474679	ENSMZEP00005036428	ENSMZEP00005029334	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.744
LOC101468893	LOC101474965	ENSMZEP00005036428	ENSMZEP00005038084	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor subfamily 1, group H, member 5.	0.789
LOC101468893	LOC101483328	ENSMZEP00005036428	ENSMZEP00005005700	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor coactivator.	0.708
LOC101468893	NCOA3	ENSMZEP00005036428	ENSMZEP00005034817	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor coactivator 3.	0.708
LOC101468893	PPARA	ENSMZEP00005036428	ENSMZEP00005013548	Nuclear receptor subfamily 1, group D, member 4a.	Peroxisome proliferator-activated receptor alpha b.	0.632
LOC101468893	PPARG	ENSMZEP00005036428	ENSMZEP00005018493	Nuclear receptor subfamily 1, group D, member 4a.	Peroxisome proliferator activated receptor gamma.	0.632