(14 nodes) NuRD complex, and Methyl-CpG binding protein 2/3, C-terminal domain network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chd5	Chromodomain helicase DNA binding protein 5. (1797 aa)
	LOC101467215	Methyl-CpG binding domain protein 2. (266 aa)
	LOC101484948	Chromodomain helicase DNA binding protein 4a. (1954 aa)
	mta3	Metastasis associated 1 family, member 3. (700 aa)
	LOC101480296	Methyl-CpG binding domain protein 3a. (297 aa)
	ENSMZEP00005011879	RT_RNaseH_2 domain-containing protein. (156 aa)
	gatad2a	GATA zinc finger domain containing 2Ab. (651 aa)
	mta1	Metastasis associated 1. (628 aa)
	gatad2b	GATA zinc finger domain containing 2B. (649 aa)
	chd4	Uncharacterized protein. (1813 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (2127 aa)
	mta2	Metastasis associated 1 family, member 2. (663 aa)
	LOC101466003	GATA zinc finger domain containing 2A. (736 aa)
	LOC101484292	Uncharacterized protein. (239 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005011879	LOC101467215	ENSMZEP00005011879	ENSMZEP00005001607	RT_RNaseH_2 domain-containing protein.	Methyl-CpG binding domain protein 2.	0.567
ENSMZEP00005011879	LOC101480296	ENSMZEP00005011879	ENSMZEP00005009085	RT_RNaseH_2 domain-containing protein.	Methyl-CpG binding domain protein 3a.	0.567
ENSMZEP00005011879	LOC101484292	ENSMZEP00005011879	ENSMZEP00005034277	RT_RNaseH_2 domain-containing protein.	Uncharacterized protein.	0.567
ENSMZEP00005011879	LOC101484948	ENSMZEP00005011879	ENSMZEP00005002283	RT_RNaseH_2 domain-containing protein.	Chromodomain helicase DNA binding protein 4a.	0.701
ENSMZEP00005011879	chd3	ENSMZEP00005011879	ENSMZEP00005028531	RT_RNaseH_2 domain-containing protein.	Chromodomain helicase DNA binding protein 3.	0.701
ENSMZEP00005011879	chd4	ENSMZEP00005011879	ENSMZEP00005023746	RT_RNaseH_2 domain-containing protein.	Uncharacterized protein.	0.701
ENSMZEP00005011879	chd5	ENSMZEP00005011879	ENSMZEP00005001102	RT_RNaseH_2 domain-containing protein.	Chromodomain helicase DNA binding protein 5.	0.701
ENSMZEP00005011879	mta1	ENSMZEP00005011879	ENSMZEP00005019529	RT_RNaseH_2 domain-containing protein.	Metastasis associated 1.	0.683
ENSMZEP00005011879	mta2	ENSMZEP00005011879	ENSMZEP00005029957	RT_RNaseH_2 domain-containing protein.	Metastasis associated 1 family, member 2.	0.683
ENSMZEP00005011879	mta3	ENSMZEP00005011879	ENSMZEP00005003366	RT_RNaseH_2 domain-containing protein.	Metastasis associated 1 family, member 3.	0.683
LOC101466003	LOC101467215	ENSMZEP00005034213	ENSMZEP00005001607	GATA zinc finger domain containing 2A.	Methyl-CpG binding domain protein 2.	0.756
LOC101466003	LOC101480296	ENSMZEP00005034213	ENSMZEP00005009085	GATA zinc finger domain containing 2A.	Methyl-CpG binding domain protein 3a.	0.756
LOC101466003	LOC101484292	ENSMZEP00005034213	ENSMZEP00005034277	GATA zinc finger domain containing 2A.	Uncharacterized protein.	0.715
LOC101466003	LOC101484948	ENSMZEP00005034213	ENSMZEP00005002283	GATA zinc finger domain containing 2A.	Chromodomain helicase DNA binding protein 4a.	0.777
LOC101466003	chd3	ENSMZEP00005034213	ENSMZEP00005028531	GATA zinc finger domain containing 2A.	Chromodomain helicase DNA binding protein 3.	0.777
LOC101466003	chd4	ENSMZEP00005034213	ENSMZEP00005023746	GATA zinc finger domain containing 2A.	Uncharacterized protein.	0.777
LOC101466003	chd5	ENSMZEP00005034213	ENSMZEP00005001102	GATA zinc finger domain containing 2A.	Chromodomain helicase DNA binding protein 5.	0.777
LOC101466003	mta1	ENSMZEP00005034213	ENSMZEP00005019529	GATA zinc finger domain containing 2A.	Metastasis associated 1.	0.730
LOC101466003	mta2	ENSMZEP00005034213	ENSMZEP00005029957	GATA zinc finger domain containing 2A.	Metastasis associated 1 family, member 2.	0.730
LOC101466003	mta3	ENSMZEP00005034213	ENSMZEP00005003366	GATA zinc finger domain containing 2A.	Metastasis associated 1 family, member 3.	0.730