39 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	six3	SIX homeobox 3a. (294 aa)
	LOC101476325	Uncharacterized protein. (1151 aa)
	PER2	Period circadian regulator 2. (1491 aa)
	ENSMZEP00005037983	Uncharacterized protein. (101 aa)
	ENSMZEP00005000180	Uncharacterized protein. (380 aa)
	ENSMZEP00005000240	Period_C domain-containing protein. (522 aa)
	LOC101482142	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (443 aa)
	PHF12	PHD finger protein 12. (850 aa)
	LOC101467118	Uncharacterized protein. (1034 aa)
	LOC101473641	Si:ch211-194b1.1. (2071 aa)
	LOC101467801	SIX homeobox 3b. (279 aa)
	LOC101471031	Protein kinase domain-containing protein. (1096 aa)
	nr1d1	Nuclear receptor subfamily 1, group d, member 1. (602 aa)
	znf644	Zinc finger protein 644a. (1152 aa)
	ENSMZEP00005006854	Uncharacterized protein. (308 aa)
	ENSMZEP00005006877	ANK_REP_REGION domain-containing protein. (114 aa)
	LOC101479865	Period circadian clock 3. (1234 aa)
	per1	Period circadian clock 1b. (1417 aa)
	LOC101481621	SIX homeobox 7. (260 aa)
	phf12	PHD finger protein 12b. (1097 aa)
	lef1	Lymphoid enhancer-binding factor 1. (361 aa)
	LOC112429774	Uncharacterized protein. (107 aa)
	thap7	THAP-type domain-containing protein. (598 aa)
	LOC101469537	CCR4-NOT transcription complex, subunit 2. (522 aa)
	ENSMZEP00005022013	Protein kinase domain-containing protein. (452 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (540 aa)
	LOC101468050	Nuclear receptor subfamily 1, group D, member 4b. (587 aa)
	ENSMZEP00005009890	SIX homeobox 6a. (245 aa)
	eed	Embryonic ectoderm development. (443 aa)
	LOC101481293	Euchromatic histone-lysine N-methyltransferase 1b. (1292 aa)
	LOC101480389	Ubiquitin-like domain-containing protein. (119 aa)
	LOC101481404	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (448 aa)
	LOC101477591	Si:dkey-217d24.6. (754 aa)
	ENSMZEP00005012999	Uncharacterized protein. (917 aa)
	LOC101464136	Uncharacterized protein. (232 aa)
	LOC101469837	Elongin B. (119 aa)
	ehmt2	Euchromatic histone-lysine N-methyltransferase 2. (1207 aa)
	LOC101485591	Period circadian clock 2. (1437 aa)
	HDGF	Heparin binding growth factor. (108 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	LOC101469537	ENSMZEP00005021525	ENSMZEP00005023091	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 2.	0.901
ENSMZEP00005000180	ENSMZEP00005000240	ENSMZEP00005000180	ENSMZEP00005000240	Uncharacterized protein.	Period_C domain-containing protein.	0.764
ENSMZEP00005000240	ENSMZEP00005000180	ENSMZEP00005000240	ENSMZEP00005000180	Period_C domain-containing protein.	Uncharacterized protein.	0.764
ENSMZEP00005006854	ENSMZEP00005006877	ENSMZEP00005006854	ENSMZEP00005006877	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.495
ENSMZEP00005006854	LOC101473641	ENSMZEP00005006854	ENSMZEP00005003129	Uncharacterized protein.	Si:ch211-194b1.1.	0.507
ENSMZEP00005006854	LOC101477591	ENSMZEP00005006854	ENSMZEP00005013583	Uncharacterized protein.	Si:dkey-217d24.6.	0.507
ENSMZEP00005006854	eed	ENSMZEP00005006854	ENSMZEP00005020638	Uncharacterized protein.	Embryonic ectoderm development.	0.590
ENSMZEP00005006877	ENSMZEP00005006854	ENSMZEP00005006877	ENSMZEP00005006854	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.495
ENSMZEP00005006877	LOC101473641	ENSMZEP00005006877	ENSMZEP00005003129	ANK_REP_REGION domain-containing protein.	Si:ch211-194b1.1.	0.507
ENSMZEP00005006877	LOC101477591	ENSMZEP00005006877	ENSMZEP00005013583	ANK_REP_REGION domain-containing protein.	Si:dkey-217d24.6.	0.507
ENSMZEP00005006877	eed	ENSMZEP00005006877	ENSMZEP00005020638	ANK_REP_REGION domain-containing protein.	Embryonic ectoderm development.	0.590
ENSMZEP00005012999	LOC101464136	ENSMZEP00005012999	ENSMZEP00005012985	Uncharacterized protein.	Uncharacterized protein.	0.879
LOC101464136	ENSMZEP00005012999	ENSMZEP00005012985	ENSMZEP00005012999	Uncharacterized protein.	Uncharacterized protein.	0.879
LOC101467118	lef1	ENSMZEP00005002109	ENSMZEP00005026290	Uncharacterized protein.	Lymphoid enhancer-binding factor 1.	0.950
LOC101468050	per1	ENSMZEP00005008965	ENSMZEP00005028680	Nuclear receptor subfamily 1, group D, member 4b.	Period circadian clock 1b.	0.419
LOC101469537	CNOT2	ENSMZEP00005023091	ENSMZEP00005021525	CCR4-NOT transcription complex, subunit 2.	CCR4-NOT transcription complex subunit 2.	0.901
LOC101469837	LOC101480389	ENSMZEP00005031083	ENSMZEP00005019125	Elongin B.	Ubiquitin-like domain-containing protein.	0.901
LOC101473641	ENSMZEP00005006854	ENSMZEP00005003129	ENSMZEP00005006854	Si:ch211-194b1.1.	Uncharacterized protein.	0.507
LOC101473641	ENSMZEP00005006877	ENSMZEP00005003129	ENSMZEP00005006877	Si:ch211-194b1.1.	ANK_REP_REGION domain-containing protein.	0.507
LOC101473641	LOC101481293	ENSMZEP00005003129	ENSMZEP00005019910	Si:ch211-194b1.1.	Euchromatic histone-lysine N-methyltransferase 1b.	0.507