(29 nodes) Telencephalon cell migration network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arl13b	ADP-ribosylation factor-like 13b. (406 aa)
	pex13	Peroxisomal biogenesis factor 13. (433 aa)
	efhc1	EF-hand domain (C-terminal) containing 1. (559 aa)
	ENSMZEP00005024872	Uncharacterized protein. (422 aa)
	LOC101477257	Cyclin-dependent kinase 5 activator. (335 aa)
	htr6	5-hydroxytryptamine (serotonin) receptor 6; Belongs to the G-protein coupled receptor 1 family. (452 aa)
	foxg1	Forkhead box G1a. (323 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC101474468	Fork-head domain-containing protein. (334 aa)
	cdk5r2	Cyclin-dependent kinase 5, regulatory subunit 2b (p39). (295 aa)
	LOC101469646	MADS-box domain-containing protein. (506 aa)
	SRF	Serum response factor. (618 aa)
	Disc1	Uncharacterized protein. (610 aa)
	BMERB1	BMERB domain containing 1. (199 aa)
	cdk5r1	Cyclin-dependent kinase 5 activator. (308 aa)
	LOC101463630	SUN domain-containing protein. (582 aa)
	RELN	Reelin. (3454 aa)
	ENSMZEP00005005351	Uncharacterized protein. (281 aa)
	LOC101467445	Cyclin-dependent kinase 5 activator. (330 aa)
	cntn2	Contactin 2. (1042 aa)
	ENSMZEP00005036539	EGF-like domain-containing protein. (102 aa)
	ENSMZEP00005033760	Uncharacterized protein. (340 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2533 aa)
	LOC101484649	Fork-head domain-containing protein. (398 aa)
	LOC101485780	SUN domain-containing protein. (898 aa)
	ENSMZEP00005020169	EGF-like domain-containing protein. (78 aa)
	ENSMZEP00005020489	MADS-box domain-containing protein. (477 aa)
	dcx	Uncharacterized protein. (355 aa)
	sun1	Sad1 and UNC84 domain containing 1. (1076 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005005351	cdk5	ENSMZEP00005005351	ENSMZEP00005033499	Uncharacterized protein.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.905
ENSMZEP00005020489	LOC101474468	ENSMZEP00005020489	ENSMZEP00005003571	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.413
ENSMZEP00005020489	LOC101484649	ENSMZEP00005020489	ENSMZEP00005017370	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.413
ENSMZEP00005020489	foxg1	ENSMZEP00005020489	ENSMZEP00005032220	MADS-box domain-containing protein.	Forkhead box G1a.	0.413
ENSMZEP00005033760	cdk5	ENSMZEP00005033760	ENSMZEP00005033499	Uncharacterized protein.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.905
LOC101467445	cdk5	ENSMZEP00005037685	ENSMZEP00005033499	Cyclin-dependent kinase 5 activator.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.905
LOC101469646	LOC101474468	ENSMZEP00005000368	ENSMZEP00005003571	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.413
LOC101469646	LOC101484649	ENSMZEP00005000368	ENSMZEP00005017370	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.413
LOC101469646	SRF	ENSMZEP00005000368	ENSMZEP00005013823	MADS-box domain-containing protein.	Serum response factor.	0.903
LOC101469646	foxg1	ENSMZEP00005000368	ENSMZEP00005032220	MADS-box domain-containing protein.	Forkhead box G1a.	0.413
LOC101474468	ENSMZEP00005020489	ENSMZEP00005003571	ENSMZEP00005020489	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.413
LOC101474468	LOC101469646	ENSMZEP00005003571	ENSMZEP00005000368	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.413
LOC101474468	SRF	ENSMZEP00005003571	ENSMZEP00005013823	Fork-head domain-containing protein.	Serum response factor.	0.413
LOC101477257	cdk5	ENSMZEP00005025175	ENSMZEP00005033499	Cyclin-dependent kinase 5 activator.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.907
LOC101484649	ENSMZEP00005020489	ENSMZEP00005017370	ENSMZEP00005020489	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.413
LOC101484649	LOC101469646	ENSMZEP00005017370	ENSMZEP00005000368	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.413
LOC101484649	SRF	ENSMZEP00005017370	ENSMZEP00005013823	Fork-head domain-containing protein.	Serum response factor.	0.413
SRF	LOC101469646	ENSMZEP00005013823	ENSMZEP00005000368	Serum response factor.	MADS-box domain-containing protein.	0.903
SRF	LOC101474468	ENSMZEP00005013823	ENSMZEP00005003571	Serum response factor.	Fork-head domain-containing protein.	0.413
SRF	LOC101484649	ENSMZEP00005013823	ENSMZEP00005017370	Serum response factor.	Fork-head domain-containing protein.	0.413