66 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	rpl28	Ribosomal protein L28. (140 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	eif2a	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (580 aa)
	LOC101488024	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (404 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)
	ENSMZEP00005037597	Ribosomal_L16 domain-containing protein. (145 aa)
	LOC101463883	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	LOC101466703	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	RPL7A	Ribosomal protein L7a. (281 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	ENSMZEP00005004836	Uncharacterized protein. (106 aa)
	rps28	Ribosomal protein S28. (69 aa)
	LOC101464765	Ribosomal protein L10. (215 aa)
	LOC101466427	40S ribosomal protein S27. (138 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	LOC101473049	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
	LOC101480390	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (190 aa)
	LOC101484702	Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	eif2d	Eukaryotic translation initiation factor 2D. (592 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (187 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	rpl4	Ribosomal protein L4. (369 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	LOC101477750	40S ribosomal protein S27. (90 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	ENSMZEP00005029002	Uncharacterized protein. (98 aa)
	rpl7	Ribosomal protein L7. (245 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (319 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
	LOC101463925	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (182 aa)
	LOC106676778	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	LOC101464222	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	LOC101464698	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (182 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	rps9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rpl18	Ribosomal protein L18. (188 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	LOC101474444	40S ribosomal protein S27. (84 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl7l1	Ribosomal protein L7-like 1. (283 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (195 aa)
	rps29	Ribosomal protein S29. (56 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	LOC101482523	Ribosomal_L14e domain-containing protein. (137 aa)
	rpl37a	Ribosomal protein L37a. (90 aa)
	LOC112433820	Ribosomal protein L14. (148 aa)
	RPL5-2	Ribosomal protein L5b. (297 aa)
	rpl6	Ribosomal protein L6. (295 aa)
	ENSMZEP00005012323	40S ribosomal protein S27. (91 aa)
	LOC101484456	Ribosomal protein L26. (145 aa)
	Rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (116 aa)
	ENSMZEP00005009682	Ribosomal_L18e/L15P domain-containing protein. (192 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (248 aa)
	RPL5	Ribosomal protein L5. (298 aa)
	ENSMZEP00005006598	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (203 aa)
	LOC101479652	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (370 aa)
	ENSMZEP00005004035	Uncharacterized protein. (134 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	RPL3L	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (401 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005004035	ENSMZEP00005004836	ENSMZEP00005004035	ENSMZEP00005004836	Uncharacterized protein.	Uncharacterized protein.	0.948
ENSMZEP00005004035	ENSMZEP00005006598	ENSMZEP00005004035	ENSMZEP00005006598	Uncharacterized protein.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.989
ENSMZEP00005004035	ENSMZEP00005009682	ENSMZEP00005004035	ENSMZEP00005009682	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.969
ENSMZEP00005004035	ENSMZEP00005012323	ENSMZEP00005004035	ENSMZEP00005012323	Uncharacterized protein.	40S ribosomal protein S27.	0.860
ENSMZEP00005004035	ENSMZEP00005029002	ENSMZEP00005004035	ENSMZEP00005029002	Uncharacterized protein.	Uncharacterized protein.	0.951
ENSMZEP00005004035	ENSMZEP00005037597	ENSMZEP00005004035	ENSMZEP00005037597	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.969
ENSMZEP00005004035	LOC101463883	ENSMZEP00005004035	ENSMZEP00005037532	Uncharacterized protein.	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.969
ENSMZEP00005004035	LOC101464765	ENSMZEP00005004035	ENSMZEP00005035513	Uncharacterized protein.	Ribosomal protein L10.	0.969
ENSMZEP00005004035	LOC101466427	ENSMZEP00005004035	ENSMZEP00005035504	Uncharacterized protein.	40S ribosomal protein S27.	0.886
ENSMZEP00005004035	LOC101466703	ENSMZEP00005004035	ENSMZEP00005004149	Uncharacterized protein.	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.969
ENSMZEP00005004035	LOC101473049	ENSMZEP00005004035	ENSMZEP00005034281	Uncharacterized protein.	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	0.950
ENSMZEP00005004035	LOC101474444	ENSMZEP00005004035	ENSMZEP00005021057	Uncharacterized protein.	40S ribosomal protein S27.	0.886
ENSMZEP00005004035	LOC101477750	ENSMZEP00005004035	ENSMZEP00005030154	Uncharacterized protein.	40S ribosomal protein S27.	0.886
ENSMZEP00005004035	LOC101479652	ENSMZEP00005004035	ENSMZEP00005004086	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.983
ENSMZEP00005004035	LOC101482523	ENSMZEP00005004035	ENSMZEP00005015675	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.948
ENSMZEP00005004035	LOC101484456	ENSMZEP00005004035	ENSMZEP00005011860	Uncharacterized protein.	Ribosomal protein L26.	0.993
ENSMZEP00005004035	LOC101488024	ENSMZEP00005004035	ENSMZEP00005001900	Uncharacterized protein.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.950
ENSMZEP00005004035	LOC112433820	ENSMZEP00005004035	ENSMZEP00005014015	Uncharacterized protein.	Ribosomal protein L14.	0.948
ENSMZEP00005004035	RPL19	ENSMZEP00005004035	ENSMZEP00005020929	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.977
ENSMZEP00005004035	RPL19-2	ENSMZEP00005004035	ENSMZEP00005030757	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.977