41 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ift140	Intraflagellar transport 140 homolog (Chlamydomonas). (1362 aa)
	LOC101466985	Dickkopf WNT signaling pathway inhibitor 1a. (253 aa)
	wdpcp	WD repeat containing planar cell polarity effector. (698 aa)
	LOC101470732	Homeobox C10a. (330 aa)
	msx1	Muscle segment homeobox 1a. (283 aa)
	ENSMZEP00005034628	Uncharacterized protein. (192 aa)
	wdr19	WD repeat domain 19. (1339 aa)
	sall4	Spalt-like transcription factor 4. (1081 aa)
	bax	Uncharacterized protein. (205 aa)
	fras1	Fraser extracellular matrix complex subunit 1. (4003 aa)
	ENSMZEP00005026775	Uncharacterized protein. (203 aa)
	fbxw4	F-box and WD repeat domain containing 4. (389 aa)
	lef1	Lymphoid enhancer-binding factor 1. (361 aa)
	tbx3	T-box transcription factor 3a. (710 aa)
	LOC101472093	Protein kinase domain-containing protein. (668 aa)
	LOC112432380	Uncharacterized protein. (204 aa)
	tbx4	T-box transcription factor 4. (534 aa)
	sfrp2	Secreted frizzled-related protein 2. (295 aa)
	ENSMZEP00005014399	Uncharacterized protein. (165 aa)
	mks1	MKS transition zone complex subunit 1. (563 aa)
	frem3	Fras1 related extracellular matrix 3. (3135 aa)
	ift52	Intraflagellar transport 52 homolog (Chlamydomonas). (439 aa)
	LOC105941156	Uncharacterized protein. (336 aa)
	ALX3	ALX homeobox 3. (367 aa)
	LOC101487542	Growth arrest-specific 1b. (246 aa)
	map3k20	Uncharacterized protein. (804 aa)
	sp9	Sp9 transcription factor. (439 aa)
	LOC101481185	Mothers against decapentaplegic homolog. (503 aa)
	LOC101473404	Homeobox protein engrailed-like. (291 aa)
	LOC101485383	Mothers against decapentaplegic homolog. (606 aa)
	LOC101472197	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (190 aa)
	fgf4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (193 aa)
	LOC101467180	Mothers against decapentaplegic homolog. (494 aa)
	ENSMZEP00005003655	RPGRIP1 like. (1060 aa)
	ENSMZEP00005004331	T-box transcription factor 3b. (380 aa)
	LOC101484873	Homeobox protein engrailed-like. (284 aa)
	tbx5	Uncharacterized protein. (529 aa)
	LOC101485614	Mothers against decapentaplegic homolog. (510 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1752 aa)
	LOC101468530	Sp8 transcription factor b. (452 aa)
	LOC101479746	FRAS1 related extracellular matrix 2b. (3102 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005003655	mks1	ENSMZEP00005003655	ENSMZEP00005013336	RPGRIP1 like.	MKS transition zone complex subunit 1.	0.483
ENSMZEP00005003655	wdr19	ENSMZEP00005003655	ENSMZEP00005031804	RPGRIP1 like.	WD repeat domain 19.	0.513
ENSMZEP00005014399	ENSMZEP00005026775	ENSMZEP00005014399	ENSMZEP00005026775	Uncharacterized protein.	Uncharacterized protein.	0.790
ENSMZEP00005026775	ENSMZEP00005014399	ENSMZEP00005026775	ENSMZEP00005014399	Uncharacterized protein.	Uncharacterized protein.	0.790
ENSMZEP00005026775	LOC112432380	ENSMZEP00005026775	ENSMZEP00005002662	Uncharacterized protein.	Uncharacterized protein.	0.790
ENSMZEP00005026775	bax	ENSMZEP00005026775	ENSMZEP00005030288	Uncharacterized protein.	Uncharacterized protein.	0.790
ENSMZEP00005034628	mks1	ENSMZEP00005034628	ENSMZEP00005013336	Uncharacterized protein.	MKS transition zone complex subunit 1.	0.483
ENSMZEP00005034628	wdr19	ENSMZEP00005034628	ENSMZEP00005031804	Uncharacterized protein.	WD repeat domain 19.	0.513
LOC101466985	LOC105941156	ENSMZEP00005036996	ENSMZEP00005009851	Dickkopf WNT signaling pathway inhibitor 1a.	Uncharacterized protein.	0.469
LOC101466985	lef1	ENSMZEP00005036996	ENSMZEP00005026290	Dickkopf WNT signaling pathway inhibitor 1a.	Lymphoid enhancer-binding factor 1.	0.578
LOC101466985	sfrp2	ENSMZEP00005036996	ENSMZEP00005014757	Dickkopf WNT signaling pathway inhibitor 1a.	Secreted frizzled-related protein 2.	0.469
LOC101467180	lef1	ENSMZEP00005022659	ENSMZEP00005026290	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.501
LOC101472093	map3k20	ENSMZEP00005003191	ENSMZEP00005006608	Protein kinase domain-containing protein.	Uncharacterized protein.	0.902
LOC101479746	fras1	ENSMZEP00005015641	ENSMZEP00005027188	FRAS1 related extracellular matrix 2b.	Fraser extracellular matrix complex subunit 1.	0.895
LOC101481185	LOC101485383	ENSMZEP00005024930	ENSMZEP00005023404	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101481185	LOC101485614	ENSMZEP00005024930	ENSMZEP00005006313	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC101481185	lef1	ENSMZEP00005024930	ENSMZEP00005026290	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.947
LOC101485383	LOC101481185	ENSMZEP00005023404	ENSMZEP00005024930	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101485383	LOC101485614	ENSMZEP00005023404	ENSMZEP00005006313	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101485383	lef1	ENSMZEP00005023404	ENSMZEP00005026290	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.947