19 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	rab30	RAB30, member RAS oncogene family. (219 aa)
	LOC101473432	Si:dkey-16l2.16. (224 aa)
	rab12	RAB12, member RAS oncogene family. (243 aa)
	ENSMZEP00005004211	Reverse transcriptase domain-containing protein. (294 aa)
	LOC101483604	RAB33A, member RAS oncogene family. (280 aa)
	ppp1r21	Protein phosphatase 1, regulatory subunit 21. (785 aa)
	ENSMZEP00005013795	RAB9B, member RAS oncogene family. (222 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	ENSMZEP00005004946	Reverse transcriptase domain-containing protein. (302 aa)
	LOC101473034	RAB33B, member RAS oncogene family a. (261 aa)
	RAB9A	RAB9A, member RAS oncogene family. (202 aa)
	ENSMZEP00005028341	Uncharacterized protein. (219 aa)
	rab21	RAB21, member RAS oncogene family. (216 aa)
	rab4b	RAB4B, member RAS oncogene family. (244 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	ENSMZEP00005001942	Reverse transcriptase domain-containing protein. (302 aa)
	TMEM19	Transmembrane protein 19. (335 aa)
	LOC101463598	Zgc:101559. (234 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005013795	ENSMZEP00005028341	ENSMZEP00005013795	ENSMZEP00005028341	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.907
ENSMZEP00005013795	LOC101463598	ENSMZEP00005013795	ENSMZEP00005029210	RAB9B, member RAS oncogene family.	Zgc:101559.	0.408
ENSMZEP00005013795	LOC101473034	ENSMZEP00005013795	ENSMZEP00005001837	RAB9B, member RAS oncogene family.	RAB33B, member RAS oncogene family a.	0.404
ENSMZEP00005013795	LOC101483604	ENSMZEP00005013795	ENSMZEP00005007074	RAB9B, member RAS oncogene family.	RAB33A, member RAS oncogene family.	0.403
ENSMZEP00005013795	RAB9A	ENSMZEP00005013795	ENSMZEP00005003234	RAB9B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.906
ENSMZEP00005013795	rab4a	ENSMZEP00005013795	ENSMZEP00005014738	RAB9B, member RAS oncogene family.	RAB4a, member RAS oncogene family.	0.421
ENSMZEP00005013795	rab4b	ENSMZEP00005013795	ENSMZEP00005021846	RAB9B, member RAS oncogene family.	RAB4B, member RAS oncogene family.	0.425
ENSMZEP00005028341	ENSMZEP00005013795	ENSMZEP00005028341	ENSMZEP00005013795	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.907
ENSMZEP00005028341	LOC101463598	ENSMZEP00005028341	ENSMZEP00005029210	Uncharacterized protein.	Zgc:101559.	0.407
ENSMZEP00005028341	LOC101473034	ENSMZEP00005028341	ENSMZEP00005001837	Uncharacterized protein.	RAB33B, member RAS oncogene family a.	0.403
ENSMZEP00005028341	LOC101483604	ENSMZEP00005028341	ENSMZEP00005007074	Uncharacterized protein.	RAB33A, member RAS oncogene family.	0.401
ENSMZEP00005028341	RAB9A	ENSMZEP00005028341	ENSMZEP00005003234	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.901
ENSMZEP00005028341	rab4a	ENSMZEP00005028341	ENSMZEP00005014738	Uncharacterized protein.	RAB4a, member RAS oncogene family.	0.424
ENSMZEP00005028341	rab4b	ENSMZEP00005028341	ENSMZEP00005021846	Uncharacterized protein.	RAB4B, member RAS oncogene family.	0.424
LOC101463598	ENSMZEP00005013795	ENSMZEP00005029210	ENSMZEP00005013795	Zgc:101559.	RAB9B, member RAS oncogene family.	0.408
LOC101463598	ENSMZEP00005028341	ENSMZEP00005029210	ENSMZEP00005028341	Zgc:101559.	Uncharacterized protein.	0.407
LOC101463598	LOC101473034	ENSMZEP00005029210	ENSMZEP00005001837	Zgc:101559.	RAB33B, member RAS oncogene family a.	0.902
LOC101473034	ENSMZEP00005013795	ENSMZEP00005001837	ENSMZEP00005013795	RAB33B, member RAS oncogene family a.	RAB9B, member RAS oncogene family.	0.404
LOC101473034	ENSMZEP00005028341	ENSMZEP00005001837	ENSMZEP00005028341	RAB33B, member RAS oncogene family a.	Uncharacterized protein.	0.403
LOC101473034	LOC101463598	ENSMZEP00005001837	ENSMZEP00005029210	RAB33B, member RAS oncogene family a.	Zgc:101559.	0.902