14 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101464191	Ripply transcriptional repressor 2. (106 aa)
	LOC101485614	Mothers against decapentaplegic homolog. (510 aa)
	LOC101471086	Lysine (K)-specific demethylase 6A, like. (1472 aa)
	LOC101481780	Mesoderm posterior ba. (265 aa)
	LOC101466020	Uncharacterized protein. (185 aa)
	tmed2	Transmembrane p24 trafficking protein 2. (207 aa)
	LOC101467180	Mothers against decapentaplegic homolog. (494 aa)
	LOC101485383	Mothers against decapentaplegic homolog. (606 aa)
	LOC101481185	Mothers against decapentaplegic homolog. (503 aa)
	LOC101471329	Uncharacterized protein. (184 aa)
	kdm6a	Lysine (K)-specific demethylase 6A. (1450 aa)
	foxh1	Forkhead box H1. (514 aa)
	LOC101483640	RAP1A, member of RAS oncogene family a. (185 aa)
	TMED2	Transmembrane p24 trafficking protein 2. (201 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101466020	LOC101471329	ENSMZEP00005007237	ENSMZEP00005025938	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101466020	LOC101483640	ENSMZEP00005007237	ENSMZEP00005035353	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.900
LOC101467180	foxh1	ENSMZEP00005022659	ENSMZEP00005028483	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.669
LOC101471329	LOC101466020	ENSMZEP00005025938	ENSMZEP00005007237	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101471329	LOC101483640	ENSMZEP00005025938	ENSMZEP00005035353	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.900
LOC101481185	LOC101485383	ENSMZEP00005024930	ENSMZEP00005023404	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101481185	LOC101485614	ENSMZEP00005024930	ENSMZEP00005006313	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC101481185	foxh1	ENSMZEP00005024930	ENSMZEP00005028483	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.669
LOC101483640	LOC101466020	ENSMZEP00005035353	ENSMZEP00005007237	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.900
LOC101483640	LOC101471329	ENSMZEP00005035353	ENSMZEP00005025938	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.900
LOC101485383	LOC101481185	ENSMZEP00005023404	ENSMZEP00005024930	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101485383	LOC101485614	ENSMZEP00005023404	ENSMZEP00005006313	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101485383	foxh1	ENSMZEP00005023404	ENSMZEP00005028483	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.669
LOC101485614	LOC101481185	ENSMZEP00005006313	ENSMZEP00005024930	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC101485614	LOC101485383	ENSMZEP00005006313	ENSMZEP00005023404	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC101485614	foxh1	ENSMZEP00005006313	ENSMZEP00005028483	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.669
foxh1	LOC101467180	ENSMZEP00005028483	ENSMZEP00005022659	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.669
foxh1	LOC101481185	ENSMZEP00005028483	ENSMZEP00005024930	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.669
foxh1	LOC101485383	ENSMZEP00005028483	ENSMZEP00005023404	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.669
foxh1	LOC101485614	ENSMZEP00005028483	ENSMZEP00005006313	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.669