22 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ints2	Integrator complex subunit 2. (1215 aa)
	exosc7	Exosome component 7. (291 aa)
	ints8	Integrator complex subunit 8. (995 aa)
	LOC105940710	Integrator complex subunit 7. (933 aa)
	exosc4	Exosome component 4. (245 aa)
	exosc8	Exosome component 8. (277 aa)
	exosc5	Exosome component 5. (232 aa)
	ints14	Integrator complex subunit 14. (512 aa)
	ints1	Integrator complex subunit 1. (2175 aa)
	ints12	Integrator complex subunit 12. (448 aa)
	exosc2	Exosome component 2. (293 aa)
	ints6	Integrator complex subunit 6. (871 aa)
	toe1	Target of EGR1, exonuclease. (530 aa)
	exosc9	Exosome component 9. (426 aa)
	ENSMZEP00005015132	Uncharacterized protein. (50 aa)
	exosc6	Exosome component 6. (274 aa)
	usb1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (280 aa)
	exosc3	Exosome component 3. (244 aa)
	LOC101475885	Integrator complex subunit 6 like. (894 aa)
	ints5	Integrator complex subunit 5. (1010 aa)
	ints9	Integrator complex subunit 9. (781 aa)
	ENSMZEP00005001109	Uncharacterized protein. (99 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005001109	LOC101475885	ENSMZEP00005001109	ENSMZEP00005008255	Uncharacterized protein.	Integrator complex subunit 6 like.	0.797
ENSMZEP00005001109	ints1	ENSMZEP00005001109	ENSMZEP00005030228	Uncharacterized protein.	Integrator complex subunit 1.	0.976
ENSMZEP00005001109	ints12	ENSMZEP00005001109	ENSMZEP00005026433	Uncharacterized protein.	Integrator complex subunit 12.	0.777
ENSMZEP00005001109	ints14	ENSMZEP00005001109	ENSMZEP00005030343	Uncharacterized protein.	Integrator complex subunit 14.	0.813
ENSMZEP00005001109	ints2	ENSMZEP00005001109	ENSMZEP00005031323	Uncharacterized protein.	Integrator complex subunit 2.	0.977
ENSMZEP00005001109	ints5	ENSMZEP00005001109	ENSMZEP00005005838	Uncharacterized protein.	Integrator complex subunit 5.	0.976
ENSMZEP00005001109	ints6	ENSMZEP00005001109	ENSMZEP00005025046	Uncharacterized protein.	Integrator complex subunit 6.	0.797
ENSMZEP00005001109	ints8	ENSMZEP00005001109	ENSMZEP00005034954	Uncharacterized protein.	Integrator complex subunit 8.	0.941
ENSMZEP00005001109	ints9	ENSMZEP00005001109	ENSMZEP00005004771	Uncharacterized protein.	Integrator complex subunit 9.	0.927
ENSMZEP00005015132	LOC101475885	ENSMZEP00005015132	ENSMZEP00005008255	Uncharacterized protein.	Integrator complex subunit 6 like.	0.797
ENSMZEP00005015132	ints1	ENSMZEP00005015132	ENSMZEP00005030228	Uncharacterized protein.	Integrator complex subunit 1.	0.964
ENSMZEP00005015132	ints12	ENSMZEP00005015132	ENSMZEP00005026433	Uncharacterized protein.	Integrator complex subunit 12.	0.777
ENSMZEP00005015132	ints14	ENSMZEP00005015132	ENSMZEP00005030343	Uncharacterized protein.	Integrator complex subunit 14.	0.720
ENSMZEP00005015132	ints2	ENSMZEP00005015132	ENSMZEP00005031323	Uncharacterized protein.	Integrator complex subunit 2.	0.966
ENSMZEP00005015132	ints5	ENSMZEP00005015132	ENSMZEP00005005838	Uncharacterized protein.	Integrator complex subunit 5.	0.964
ENSMZEP00005015132	ints6	ENSMZEP00005015132	ENSMZEP00005025046	Uncharacterized protein.	Integrator complex subunit 6.	0.797
ENSMZEP00005015132	ints8	ENSMZEP00005015132	ENSMZEP00005034954	Uncharacterized protein.	Integrator complex subunit 8.	0.941
ENSMZEP00005015132	ints9	ENSMZEP00005015132	ENSMZEP00005004771	Uncharacterized protein.	Integrator complex subunit 9.	0.892
LOC101475885	ENSMZEP00005001109	ENSMZEP00005008255	ENSMZEP00005001109	Integrator complex subunit 6 like.	Uncharacterized protein.	0.797
LOC101475885	ENSMZEP00005015132	ENSMZEP00005008255	ENSMZEP00005015132	Integrator complex subunit 6 like.	Uncharacterized protein.	0.797