STRINGSTRING
rc3h1 rc3h1 ENSMZEP00005037770 ENSMZEP00005037770 PNPT1 PNPT1 LOC101466128 LOC101466128 LOC101474749 LOC101474749 LOC101469049 LOC101469049 ENSMZEP00005031405 ENSMZEP00005031405 zc3h7a zc3h7a ENSMZEP00005027998 ENSMZEP00005027998 LOC101472753 LOC101472753 ybx1 ybx1 TUT4 TUT4 LOC101473458 LOC101473458 socs3 socs3 TUT7 TUT7 ENSMZEP00005017043 ENSMZEP00005017043 ENSMZEP00005017029 ENSMZEP00005017029 trim71 trim71 ENSMZEP00005012266 ENSMZEP00005012266 LOC101480651 LOC101480651 LOC101466039 LOC101466039 LOC101466533 LOC101466533 LOC101477172 LOC101477172 tarbp2 tarbp2 pum1 pum1 fmr1 fmr1 LOC101479458 LOC101479458 ZC3H7B ZC3H7B spout1 spout1 LOC101467055 LOC101467055
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rc3h1Ring finger and CCCH-type domains 1b. (1125 aa)
ENSMZEP00005037770Uncharacterized protein. (147 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (770 aa)
LOC101466128Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (944 aa)
LOC101474749C3H1-type domain-containing protein. (644 aa)
LOC101469049Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (867 aa)
ENSMZEP00005031405Zinc finger CCCH-type containing 12A. (296 aa)
zc3h7aZinc finger CCCH-type containing 7A. (994 aa)
ENSMZEP00005027998ELAV-like protein; Belongs to the RRM elav family. (343 aa)
LOC101472753ELAV-like protein; Belongs to the RRM elav family. (335 aa)
ybx1Y box binding protein 1. (300 aa)
TUT4Terminal uridylyl transferase 4. (1524 aa)
LOC101473458ELAV-like protein; Belongs to the RRM elav family. (343 aa)
socs3Suppressor of cytokine signaling 3a. (205 aa)
TUT7Terminal uridylyl transferase 7. (759 aa)
ENSMZEP00005017043Uncharacterized protein. (132 aa)
ENSMZEP00005017029C2H2-type domain-containing protein. (179 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (834 aa)
ENSMZEP00005012266Uncharacterized protein. (164 aa)
LOC101480651Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (870 aa)
LOC101466039Argonaute RISC component 1; Belongs to the argonaute family. (858 aa)
LOC101466533Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (860 aa)
LOC101477172Zinc finger CCCH-type containing 12A. (632 aa)
tarbp2RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (345 aa)
pum1Pumilio RNA-binding family member 1. (1163 aa)
fmr1Fragile X mental retardation 1. (600 aa)
LOC101479458Suppressor of cytokine signaling 3. (230 aa)
ZC3H7BZinc finger CCCH-type containing 7B. (1039 aa)
spout1SPOUT domain containing methyltransferase 1. (386 aa)
LOC101467055Pumilio RNA-binding family member 2. (1225 aa)
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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