(29 nodes) Sarcomere organization network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRF	Serum response factor. (618 aa)
	LOC101469646	MADS-box domain-containing protein. (506 aa)
	LOC101483382	Myozenin 2a. (270 aa)
	LOC101487148	Cysteine and glycine-rich protein 1b. (192 aa)
	ENSMZEP00005003765	Troponin T type 2b (cardiac). (245 aa)
	LOC101472153	Synaptopodin 2-like b. (1209 aa)
	LOC101469390	Uncharacterized protein. (653 aa)
	klhl41	Kelch-like family member 41a. (569 aa)
	LOC101474343	Uncharacterized protein. (221 aa)
	csrp2	Cysteine and glycine-rich protein 2. (193 aa)
	LOC101476969	BTB domain-containing protein. (607 aa)
	ENSMZEP00005024553	Uncharacterized protein. (437 aa)
	ENSMZEP00005024566	Uncharacterized protein. (249 aa)
	lrrc39	Leucine rich repeat containing 39. (352 aa)
	LOC101484677	Myozenin 2b. (243 aa)
	tcap	Titin-cap (telethonin). (179 aa)
	LOC101464478	Troponin T type 1 (skeletal, slow). (274 aa)
	ENSMZEP00005034469	Uncharacterized protein. (211 aa)
	LOC101472961	ORAI calcium release-activated calcium modulator 1b. (223 aa)
	WDR1	WD repeat domain 1. (470 aa)
	LOC101480990	Troponin T type 2a (cardiac). (282 aa)
	LOC101479356	Cysteine and glycine-rich protein 1a. (194 aa)
	LOC101479401	Uncharacterized protein. (313 aa)
	ENSMZEP00005015737	Uncharacterized protein. (224 aa)
	TNNT1	Troponin T1, slow skeletal type. (232 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (193 aa)
	LOC101473221	Uncharacterized protein. (275 aa)
	ENSMZEP00005020489	MADS-box domain-containing protein. (477 aa)
	LOC101487509	Troponin T type 3a (skeletal, fast). (298 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005003765	ENSMZEP00005034469	ENSMZEP00005003765	ENSMZEP00005034469	Troponin T type 2b (cardiac).	Uncharacterized protein.	0.420
ENSMZEP00005003765	LOC101464478	ENSMZEP00005003765	ENSMZEP00005030895	Troponin T type 2b (cardiac).	Troponin T type 1 (skeletal, slow).	0.439
ENSMZEP00005003765	LOC101473221	ENSMZEP00005003765	ENSMZEP00005019746	Troponin T type 2b (cardiac).	Uncharacterized protein.	0.457
ENSMZEP00005003765	LOC101479401	ENSMZEP00005003765	ENSMZEP00005036685	Troponin T type 2b (cardiac).	Uncharacterized protein.	0.420
ENSMZEP00005003765	LOC101487509	ENSMZEP00005003765	ENSMZEP00005021366	Troponin T type 2b (cardiac).	Troponin T type 3a (skeletal, fast).	0.453
ENSMZEP00005003765	TNNT1	ENSMZEP00005003765	ENSMZEP00005016647	Troponin T type 2b (cardiac).	Troponin T1, slow skeletal type.	0.438
ENSMZEP00005003765	csrp3	ENSMZEP00005003765	ENSMZEP00005019522	Troponin T type 2b (cardiac).	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.424
ENSMZEP00005003765	tcap	ENSMZEP00005003765	ENSMZEP00005030646	Troponin T type 2b (cardiac).	Titin-cap (telethonin).	0.428
ENSMZEP00005015737	ENSMZEP00005034469	ENSMZEP00005015737	ENSMZEP00005034469	Uncharacterized protein.	Uncharacterized protein.	0.420
ENSMZEP00005015737	LOC101473221	ENSMZEP00005015737	ENSMZEP00005019746	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSMZEP00005015737	LOC101479401	ENSMZEP00005015737	ENSMZEP00005036685	Uncharacterized protein.	Uncharacterized protein.	0.420
ENSMZEP00005015737	LOC101480990	ENSMZEP00005015737	ENSMZEP00005036384	Uncharacterized protein.	Troponin T type 2a (cardiac).	0.904
ENSMZEP00005015737	LOC101487509	ENSMZEP00005015737	ENSMZEP00005021366	Uncharacterized protein.	Troponin T type 3a (skeletal, fast).	0.413
ENSMZEP00005024553	ENSMZEP00005024566	ENSMZEP00005024553	ENSMZEP00005024566	Uncharacterized protein.	Uncharacterized protein.	0.460
ENSMZEP00005024566	ENSMZEP00005024553	ENSMZEP00005024566	ENSMZEP00005024553	Uncharacterized protein.	Uncharacterized protein.	0.460
ENSMZEP00005034469	ENSMZEP00005003765	ENSMZEP00005034469	ENSMZEP00005003765	Uncharacterized protein.	Troponin T type 2b (cardiac).	0.420
ENSMZEP00005034469	ENSMZEP00005015737	ENSMZEP00005034469	ENSMZEP00005015737	Uncharacterized protein.	Uncharacterized protein.	0.420
ENSMZEP00005034469	LOC101464478	ENSMZEP00005034469	ENSMZEP00005030895	Uncharacterized protein.	Troponin T type 1 (skeletal, slow).	0.420
ENSMZEP00005034469	LOC101473221	ENSMZEP00005034469	ENSMZEP00005019746	Uncharacterized protein.	Uncharacterized protein.	0.420
ENSMZEP00005034469	LOC101474343	ENSMZEP00005034469	ENSMZEP00005010065	Uncharacterized protein.	Uncharacterized protein.	0.420