50 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101465517	Von Willebrand factor A domain containing 5B2. (1028 aa)
	alpk2	Uncharacterized protein. (1490 aa)
	sgcb	Sarcoglycan, beta (dystrophin-associated glycoprotein). (310 aa)
	fgf8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (229 aa)
	mef2a	Myocyte enhancer factor 2aa. (491 aa)
	ENSMZEP00005029959	Ig-like domain-containing protein. (1177 aa)
	ENSMZEP00005029962	Alpha-type protein kinase domain-containing protein. (194 aa)
	tcap	Titin-cap (telethonin). (179 aa)
	NOX4	NADPH oxidase 4. (474 aa)
	acadm	Acyl-CoA dehydrogenase medium chain. (424 aa)
	Nrap	LIM zinc-binding domain-containing protein. (105 aa)
	sirt6	Sirtuin 6. (351 aa)
	hand2	Heart and neural crest derivatives expressed 2. (245 aa)
	NOX4-2	FAD-binding FR-type domain-containing protein. (471 aa)
	ENSMZEP00005000054	Uncharacterized protein. (243 aa)
	LOC101469646	MADS-box domain-containing protein. (506 aa)
	LOC101483027	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (426 aa)
	tbx1	T-box transcription factor 1. (501 aa)
	Lrrc10b	Uncharacterized protein. (304 aa)
	bmp4	Bone morphogenetic protein 4. (403 aa)
	LOC101485505	ADP-ribosylhydrolase like 1. (1049 aa)
	LOC101478377	Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily. (407 aa)
	maml1	Mastermind-like transcriptional coactivator 1. (972 aa)
	grem1	Gremlin 1a, DAN family BMP antagonist. (179 aa)
	LOC101478337	MADS-box domain-containing protein. (450 aa)
	kdm6b	Lysine (K)-specific demethylase 6B, a. (2185 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2516 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
	LOC101481780	Mesoderm posterior ba. (265 aa)
	ENSMZEP00005007667	Uncharacterized protein. (321 aa)
	irx3	Iroquois homeobox 3a. (444 aa)
	LOC101470851	Ankyrin repeat and SOCS box containing 2b. (583 aa)
	LOC101474161	Uncharacterized protein. (1656 aa)
	nkx2-5	NK2 homeobox 5. (320 aa)
	LOC101468649	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (488 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	bmp2	Bone morphogenetic protein 2b. (418 aa)
	SRF	Serum response factor. (618 aa)
	LOC101474873	Lysine (K)-specific demethylase 6B, b. (1737 aa)
	mef2c	Myocyte enhancer factor 2cb. (517 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (193 aa)
	LOC101482600	Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1. (683 aa)
	ENSMZEP00005020489	MADS-box domain-containing protein. (477 aa)
	LOC101473939	TSC complex subunit 1b. (1275 aa)
	LOC101466778	Bone morphogenetic protein 16. (510 aa)
	Lrrc10	Uncharacterized protein. (266 aa)
	opa1	OPA1 mitochondrial dynamin like GTPase; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (1032 aa)
	LOC101474152	T-box transcription factor 5a. (525 aa)
	neb	Nebulin. (6169 aa)
	ENSMZEP00005025379	Uncharacterized protein. (113 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005000054	LOC101474873	ENSMZEP00005000054	ENSMZEP00005018325	Uncharacterized protein.	Lysine (K)-specific demethylase 6B, b.	0.722
ENSMZEP00005000054	kdm6b	ENSMZEP00005000054	ENSMZEP00005006107	Uncharacterized protein.	Lysine (K)-specific demethylase 6B, a.	0.722
ENSMZEP00005000054	mtor	ENSMZEP00005000054	ENSMZEP00005006208	Uncharacterized protein.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.907
ENSMZEP00005007667	nkx2-5	ENSMZEP00005007667	ENSMZEP00005011918	Uncharacterized protein.	NK2 homeobox 5.	0.471
ENSMZEP00005020489	irx3	ENSMZEP00005020489	ENSMZEP00005008959	MADS-box domain-containing protein.	Iroquois homeobox 3a.	0.413
ENSMZEP00005020489	nkx2-5	ENSMZEP00005020489	ENSMZEP00005011918	MADS-box domain-containing protein.	NK2 homeobox 5.	0.450
ENSMZEP00005025379	Nrap	ENSMZEP00005025379	ENSMZEP00005033828	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.413
ENSMZEP00005025379	tcap	ENSMZEP00005025379	ENSMZEP00005030646	Uncharacterized protein.	Titin-cap (telethonin).	0.542
ENSMZEP00005029959	ENSMZEP00005029962	ENSMZEP00005029959	ENSMZEP00005029962	Ig-like domain-containing protein.	Alpha-type protein kinase domain-containing protein.	0.889
ENSMZEP00005029962	ENSMZEP00005029959	ENSMZEP00005029962	ENSMZEP00005029959	Alpha-type protein kinase domain-containing protein.	Ig-like domain-containing protein.	0.889
LOC101466778	grem1	ENSMZEP00005021968	ENSMZEP00005005291	Bone morphogenetic protein 16.	Gremlin 1a, DAN family BMP antagonist.	0.805
LOC101466778	nkx2-5	ENSMZEP00005021968	ENSMZEP00005011918	Bone morphogenetic protein 16.	NK2 homeobox 5.	0.416
LOC101468649	fgf8	ENSMZEP00005012660	ENSMZEP00005027841	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.446
LOC101469646	SRF	ENSMZEP00005000368	ENSMZEP00005013823	MADS-box domain-containing protein.	Serum response factor.	0.903
LOC101469646	irx3	ENSMZEP00005000368	ENSMZEP00005008959	MADS-box domain-containing protein.	Iroquois homeobox 3a.	0.413
LOC101469646	nkx2-5	ENSMZEP00005000368	ENSMZEP00005011918	MADS-box domain-containing protein.	NK2 homeobox 5.	0.450
LOC101473939	LOC101474873	ENSMZEP00005020797	ENSMZEP00005018325	TSC complex subunit 1b.	Lysine (K)-specific demethylase 6B, b.	0.722
LOC101473939	kdm6b	ENSMZEP00005020797	ENSMZEP00005006107	TSC complex subunit 1b.	Lysine (K)-specific demethylase 6B, a.	0.722
LOC101473939	mtor	ENSMZEP00005020797	ENSMZEP00005006208	TSC complex subunit 1b.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.907
LOC101474152	bmp4	ENSMZEP00005025228	ENSMZEP00005002692	T-box transcription factor 5a.	Bone morphogenetic protein 4.	0.529