49 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSMZEP00005023925	Uncharacterized protein. (288 aa)
	ATP13A3	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (654 aa)
	Atp13a3	Uncharacterized protein. (82 aa)
	ENSMZEP00005023862	annotation not available (82 aa)
	LOC101472908	MARVEL domain-containing protein. (183 aa)
	LOC101475617	Si:dkey-98f17.5. (448 aa)
	ENSMZEP00005023993	ABC transporter domain-containing protein. (276 aa)
	LOC101475028	ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1284 aa)
	lztr1	Leucine-zipper-like transcription regulator 1. (778 aa)
	LOC101483142	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)
	LOC101475165	Secretory carrier-associated membrane protein. (334 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	SCAMP2	Secretory carrier-associated membrane protein. (257 aa)
	LAMP5	Lysosomal associated membrane protein family member 5. (277 aa)
	SCAMP1	Secretory carrier-associated membrane protein. (347 aa)
	LOC101474882	Si:ch211-11k18.4. (464 aa)
	zfyve27	Zinc finger, FYVE domain containing 27. (411 aa)
	scamp1	Secretory carrier-associated membrane protein. (337 aa)
	LOC101474407	RAP2A, member of RAS oncogene family b. (183 aa)
	LOC101486054	Sortilin-related receptor, L(DLR class) A repeats containing. (1756 aa)
	LOC101482989	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1135 aa)
	ENSMZEP00005006817	ABC transporter domain-containing protein. (116 aa)
	LOC101470158	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (544 aa)
	LOC101470780	RAP2C, member of RAS oncogene family. (183 aa)
	LOC112433809	Uncharacterized protein. (1304 aa)
	arfgap3	ADP-ribosylation factor GTPase activating protein 3. (531 aa)
	pacsin2	Protein kinase C and casein kinase substrate in neurons 2. (486 aa)
	RAB11FIP3	RAB11 family interacting protein 3 (class II). (1048 aa)
	LOC101474136	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	LOC101482200	EH-domain containing 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (531 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1629 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	ABCC4	ATP binding cassette subfamily C member 4. (1206 aa)
	SPDEF	SAM pointed domain containing ETS transcription factor. (334 aa)
	ENSMZEP00005000812	Uncharacterized protein. (135 aa)
	LOC105941198	Uncharacterized protein. (1214 aa)
	ENSMZEP00005034211	Uncharacterized protein. (122 aa)
	EHD2	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (540 aa)
	LOC112433248	ABC transporter domain-containing protein. (284 aa)
	ENSMZEP00005034435	ABC transporter domain-containing protein. (140 aa)
	LOC106675948	Uncharacterized protein. (1305 aa)
	NSG1	Neuronal vesicle trafficking associated 1. (185 aa)
	LOC112431448	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	cftr	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1505 aa)
	LOC101482668	RAB11 family interacting protein 4 (class II) a. (596 aa)
	LOC101475716	Uncharacterized protein. (1608 aa)
	ENSMZEP00005034217	ABC transporter domain-containing protein. (132 aa)
	washc1	WAS protein family homolog 1. (472 aa)
	LOC101478977	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1585 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	LOC101482668	ENSMZEP00005015999	ENSMZEP00005031029	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11 family interacting protein 4 (class II) a.	0.470
ARF6	RAB11FIP3	ENSMZEP00005015999	ENSMZEP00005006180	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11 family interacting protein 3 (class II).	0.470
ARF6	arfgap3	ENSMZEP00005015999	ENSMZEP00005006521	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor GTPase activating protein 3.	0.509
EHD2	LOC101470158	ENSMZEP00005032436	ENSMZEP00005006803	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
ENSMZEP00005023925	LOC101472908	ENSMZEP00005023925	ENSMZEP00005023036	Uncharacterized protein.	MARVEL domain-containing protein.	0.525
LOC101470158	EHD2	ENSMZEP00005006803	ENSMZEP00005032436	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
LOC101472908	ENSMZEP00005023925	ENSMZEP00005023036	ENSMZEP00005023925	MARVEL domain-containing protein.	Uncharacterized protein.	0.525
LOC101474136	LOC112431448	ENSMZEP00005005876	ENSMZEP00005032249	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.900
LOC101482668	ARF6	ENSMZEP00005031029	ENSMZEP00005015999	RAB11 family interacting protein 4 (class II) a.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.470
LOC101482668	RAB11FIP3	ENSMZEP00005031029	ENSMZEP00005006180	RAB11 family interacting protein 4 (class II) a.	RAB11 family interacting protein 3 (class II).	0.900
LOC112431448	LOC101474136	ENSMZEP00005032249	ENSMZEP00005005876	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.900
RAB11FIP3	ARF6	ENSMZEP00005006180	ENSMZEP00005015999	RAB11 family interacting protein 3 (class II).	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.470
RAB11FIP3	LOC101482668	ENSMZEP00005006180	ENSMZEP00005031029	RAB11 family interacting protein 3 (class II).	RAB11 family interacting protein 4 (class II) a.	0.900
arfgap3	ARF6	ENSMZEP00005006521	ENSMZEP00005015999	ADP-ribosylation factor GTPase activating protein 3.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.509