STRINGSTRING
paxx paxx LOC101481251 LOC101481251 lig4 lig4 nhej1 nhej1 xrcc4 xrcc4 dclre1c dclre1c leng9 leng9 prkdc prkdc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
paxxUncharacterized protein. (259 aa)
LOC101481251X-ray repair complementing defective repair in Chinese hamster cells 4. (335 aa)
lig4DNA ligase. (910 aa)
nhej1Nonhomologous end-joining factor 1. (325 aa)
xrcc4Uncharacterized protein. (294 aa)
dclre1cDNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (619 aa)
leng9C3H1-type domain-containing protein. (545 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4055 aa)
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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