(9 nodes) Mucus layer network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSMZEP00005001892	Uncharacterized protein. (376 aa)
	LOC101465273	Uncharacterized protein. (1714 aa)
	ENSMZEP00005021913	Uncharacterized protein. (1039 aa)
	LOC101468533	LisH domain-containing protein. (816 aa)
	ENSMZEP00005002362	Uncharacterized protein. (1334 aa)
	ENSMZEP00005002279	Uncharacterized protein. (734 aa)
	LOC105940530	Uncharacterized protein. (1014 aa)
	LOC105940637	Uncharacterized protein. (734 aa)
	ENSMZEP00005001931	VWFD domain-containing protein. (210 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005001931	ENSMZEP00005002279	ENSMZEP00005001931	ENSMZEP00005002279	VWFD domain-containing protein.	Uncharacterized protein.	0.771
ENSMZEP00005001931	LOC105940637	ENSMZEP00005001931	ENSMZEP00005002039	VWFD domain-containing protein.	Uncharacterized protein.	0.728
ENSMZEP00005002279	ENSMZEP00005001931	ENSMZEP00005002279	ENSMZEP00005001931	Uncharacterized protein.	VWFD domain-containing protein.	0.771
ENSMZEP00005002279	ENSMZEP00005002362	ENSMZEP00005002279	ENSMZEP00005002362	Uncharacterized protein.	Uncharacterized protein.	0.840
ENSMZEP00005002362	ENSMZEP00005002279	ENSMZEP00005002362	ENSMZEP00005002279	Uncharacterized protein.	Uncharacterized protein.	0.840
ENSMZEP00005002362	LOC105940637	ENSMZEP00005002362	ENSMZEP00005002039	Uncharacterized protein.	Uncharacterized protein.	0.612
LOC105940637	ENSMZEP00005001931	ENSMZEP00005002039	ENSMZEP00005001931	Uncharacterized protein.	VWFD domain-containing protein.	0.728
LOC105940637	ENSMZEP00005002362	ENSMZEP00005002039	ENSMZEP00005002362	Uncharacterized protein.	Uncharacterized protein.	0.612