7 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101468893	Nuclear receptor subfamily 1, group D, member 4a. (581 aa)
	LOC101478180	Uncharacterized protein. (372 aa)
	ENSMZEP00005010070	Uncharacterized protein. (409 aa)
	LOC101479683	Nuclear receptor subfamily 1, group D, member 2a. (597 aa)
	thrb	Thyroid hormone receptor beta. (492 aa)
	LOC101474965	Nuclear receptor subfamily 1, group H, member 5. (494 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (485 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005010070	LOC101468893	ENSMZEP00005010070	ENSMZEP00005036428	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 4a.	0.546
ENSMZEP00005010070	LOC101478180	ENSMZEP00005010070	ENSMZEP00005025227	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSMZEP00005010070	LOC101479683	ENSMZEP00005010070	ENSMZEP00005021768	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 2a.	0.546
LOC101468893	ENSMZEP00005010070	ENSMZEP00005036428	ENSMZEP00005010070	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.546
LOC101468893	LOC101474965	ENSMZEP00005036428	ENSMZEP00005038084	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor subfamily 1, group H, member 5.	0.789
LOC101468893	LOC101478180	ENSMZEP00005036428	ENSMZEP00005025227	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.546
LOC101468893	nr1h4	ENSMZEP00005036428	ENSMZEP00005025276	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor subfamily 1, group H, member 4.	0.789
LOC101468893	thrb	ENSMZEP00005036428	ENSMZEP00005022785	Nuclear receptor subfamily 1, group D, member 4a.	Thyroid hormone receptor beta.	0.546
LOC101474965	LOC101468893	ENSMZEP00005038084	ENSMZEP00005036428	Nuclear receptor subfamily 1, group H, member 5.	Nuclear receptor subfamily 1, group D, member 4a.	0.789
LOC101474965	LOC101479683	ENSMZEP00005038084	ENSMZEP00005021768	Nuclear receptor subfamily 1, group H, member 5.	Nuclear receptor subfamily 1, group D, member 2a.	0.789
LOC101478180	ENSMZEP00005010070	ENSMZEP00005025227	ENSMZEP00005010070	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101478180	LOC101468893	ENSMZEP00005025227	ENSMZEP00005036428	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 4a.	0.546
LOC101478180	LOC101479683	ENSMZEP00005025227	ENSMZEP00005021768	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 2a.	0.546
LOC101479683	ENSMZEP00005010070	ENSMZEP00005021768	ENSMZEP00005010070	Nuclear receptor subfamily 1, group D, member 2a.	Uncharacterized protein.	0.546
LOC101479683	LOC101474965	ENSMZEP00005021768	ENSMZEP00005038084	Nuclear receptor subfamily 1, group D, member 2a.	Nuclear receptor subfamily 1, group H, member 5.	0.789
LOC101479683	LOC101478180	ENSMZEP00005021768	ENSMZEP00005025227	Nuclear receptor subfamily 1, group D, member 2a.	Uncharacterized protein.	0.546
LOC101479683	nr1h4	ENSMZEP00005021768	ENSMZEP00005025276	Nuclear receptor subfamily 1, group D, member 2a.	Nuclear receptor subfamily 1, group H, member 4.	0.789
LOC101479683	thrb	ENSMZEP00005021768	ENSMZEP00005022785	Nuclear receptor subfamily 1, group D, member 2a.	Thyroid hormone receptor beta.	0.546
nr1h4	LOC101468893	ENSMZEP00005025276	ENSMZEP00005036428	Nuclear receptor subfamily 1, group H, member 4.	Nuclear receptor subfamily 1, group D, member 4a.	0.789
nr1h4	LOC101479683	ENSMZEP00005025276	ENSMZEP00005021768	Nuclear receptor subfamily 1, group H, member 4.	Nuclear receptor subfamily 1, group D, member 2a.	0.789