(4 nodes) CHD, N-terminal network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chd3	Chromodomain helicase DNA binding protein 3. (2127 aa)
	LOC101484948	Chromodomain helicase DNA binding protein 4a. (1954 aa)
	chd5	Chromodomain helicase DNA binding protein 5. (1797 aa)
	chd4	Uncharacterized protein. (1813 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101484948	chd3	ENSMZEP00005002283	ENSMZEP00005028531	Chromodomain helicase DNA binding protein 4a.	Chromodomain helicase DNA binding protein 3.	0.423
LOC101484948	chd5	ENSMZEP00005002283	ENSMZEP00005001102	Chromodomain helicase DNA binding protein 4a.	Chromodomain helicase DNA binding protein 5.	0.423
chd3	LOC101484948	ENSMZEP00005028531	ENSMZEP00005002283	Chromodomain helicase DNA binding protein 3.	Chromodomain helicase DNA binding protein 4a.	0.423
chd3	chd4	ENSMZEP00005028531	ENSMZEP00005023746	Chromodomain helicase DNA binding protein 3.	Uncharacterized protein.	0.422
chd4	chd3	ENSMZEP00005023746	ENSMZEP00005028531	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.422
chd4	chd5	ENSMZEP00005023746	ENSMZEP00005001102	Uncharacterized protein.	Chromodomain helicase DNA binding protein 5.	0.423
chd5	LOC101484948	ENSMZEP00005001102	ENSMZEP00005002283	Chromodomain helicase DNA binding protein 5.	Chromodomain helicase DNA binding protein 4a.	0.423
chd5	chd4	ENSMZEP00005001102	ENSMZEP00005023746	Chromodomain helicase DNA binding protein 5.	Uncharacterized protein.	0.423